TSS: Hg 101110.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|BCE1= | |||
|E(spI)= | |||
|E(spl)= | |||
|ESG= | |||
|ESG4= | |||
|GRG4= | |||
|Grg-4= | |||
|chr=chr9 | |||
|cpg_percent=0.12 | |cpg_percent=0.12 | ||
|distance_to_tss= | |distance=NA | ||
|distance_to_tss=-396 | |||
|end=79572790 | |||
|end_of_center_position=79572782 | |||
|entrez_id=7091 | |entrez_id=7091 | ||
|gc_percent=0.686567 | |gc_percent=0.686567 | ||
|gene_alias=BCE-1 | |gene_alias=BCE-1{{!}}BCE1{{!}}E(spI){{!}}E(spl){{!}}ESG{{!}}ESG4{{!}}GRG4{{!}}Grg-4 | ||
|gene_description= | |gene_description=TLE family member 4, transcriptional corepressor | ||
|gene_name=TLE4 | |gene_name=TLE4 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000106829 | |nearest_ensembl=ENSG00000106829 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001351546 | ||
|nearest_refseq=NM_007005 | |nearest_refseq=NM_007005 | ||
|nearest_unigene=Hs.444213 | |nearest_unigene=Hs.444213 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=79572772 | |||
|start_of_center_position=79572781 | |||
|strand=- | |||
|tata_box=39(GCTTTAATGACC,+,0.00) | |||
|transcript_name= | |||
|tss_classification=yes | |||
|tss_id=hg_101110.1 | |tss_id=hg_101110.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:32, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -396 |
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| Nearest PromoterID: | NM_001351546 |
| Entrez ID: | 7091 |
| Nearest Unigene: | Hs.444213 |
| Nearest Refseq: | NM_007005 |
| Nearest Ensembl: | ENSG00000106829 |
| Gene Name: | TLE4 |
| Gene Alias: | BCE-1|BCE1|E(spI)|E(spl)|ESG|ESG4|GRG4|Grg-4 |
| Gene Description: | TLE family member 4, transcriptional corepressor |
| Gene Type: | protein-coding |
| CpG%: | 0.12 |
| GC%: | 0.686567 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 39(GCTTTAATGACC,+,0.00) |