TSS: Mm 123244.1: Difference between revisions

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{{TSSDetail
{{TSSDetail
|Nup58=
|Nup58=
|all_trans=ENSMUST00000225111.1:3 AK086412:3 ENSMUST00000225805.1:17 AK029688:17 ENSMUST00000225311.1:-21 NM_001362440:-21 NM_170591:-21 NM_001362439:-21 AK006062:-21 AK078279:23 AK129134:33 BC026743:39 ENSMUST00000225572.1:42 AK163792:42 ENSMUST00000041905.7:-49 AK139895:-49 AK133721:60 AK146477:71 AK194134:100 AK194884:256
|all_trans=MGI:1919094 MGI:6121524
|chr=chr14
|chr=chr14
|cpg_percent=0.14
|cpg_percent=0.14
Line 24: Line 24:
|nearest_refseq=NM_170591
|nearest_refseq=NM_170591
|nearest_unigene=Mm.258051
|nearest_unigene=Mm.258051
|num_trans=20
|num_trans=71844
|species=mouse
|species=mouse
|start=60251447
|start=60251447

Latest revision as of 18:58, 26 July 2021

Basic information about the TSS

TSS ID:mm_123244.1
Species:mouse
Chr:chr14
Start:60251447
End:60251458
Strand:-
TSS cluster detected*

  * The number of TSS cluster called studies (maximum 5)



Gene and protein annotation

Transcript_name:ENSMUST00000225111.1 AK086412
Distance:3
GeneID:71844
HGNC/MGI_ID:MGI:1919094 MGI:6121524
UniProt_ID:Q8R332
Gene_name:nucleoporin like 1; predicted gene, 49336
Gene_symbol:Gm49336 Nupl1
Gene_synonyms:1700017F11Rik
Gene_source:MGI:1919094 MGI:6121524



TATA-Box annotation

Distance to TSS:26
Nearest PromoterID:NM_001362439
Entrez ID:71844
Nearest Unigene:Mm.258051
Nearest Refseq:NM_170591
Nearest Ensembl:ENSMUSG00000114797
Gene Name:nucleoporin like 1; predicted gene, 49336
Gene Alias:1700017F11Rik|Nup58|mKIAA0410
Gene Description:nucleoporin like 1
Gene Type:protein-coding
CpG%:0.14
GC%:0.711443
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation):



TSS expression

Expression data not found.

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