TSS: Hg 236423.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |chr=chr1 |cpg_percent=0.07 |distance= |distance_to_tss=140 |end=68232412 |entrez_id=79971 |gc_percent=0.606965 |gene_alias=C1orf139|EVI|GPR177|MRP|mig-14 |gene_de...") |
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{{TSSDetail | {{TSSDetail | ||
|chr= | |EVI= | ||
|GPR177= | |||
|MRP= | |||
|all_trans=HGNC:33190 | |||
|chr=chr17 | |||
|cpg_percent=0.07 | |cpg_percent=0.07 | ||
|distance= | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=117 | ||
|end= | |end=19064139 | ||
|end_of_center_position=19064130 | |||
|entrez_id=79971 | |entrez_id=79971 | ||
|gc_percent=0.606965 | |gc_percent=0.606965 | ||
|gene_alias=C1orf139 | |gene_alias=C1orf139{{!}}EVI{{!}}GPR177{{!}}MRP{{!}}mig-14 | ||
|gene_description= | |gene_description=Wnt ligand secretion mediator | ||
|gene_name= | |gene_id=780852 | ||
|gene_name=small nucleolar RNA, C/D box 3B-2 | |||
|gene_source=HGNC:33190 | |||
|gene_symbol=SNORD3B-2 | |||
|gene_synonyms=U3-2B U3b2 | |||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:33190 | |||
|mig-14= | |||
|nearest_ensembl=ENSG00000116729 | |nearest_ensembl=ENSG00000116729 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_024911 | ||
|nearest_refseq=NM_024911 | |nearest_refseq=NM_024911 | ||
|nearest_unigene=Hs.647659 | |nearest_unigene=Hs.647659 | ||
|num_trans= | |num_trans= | ||
|species=human | |species=human | ||
|start= | |start=19064119 | ||
|strand= | |start_of_center_position=19064129 | ||
|transcript_name= | |strand=- | ||
|tss_classification= | |transcript_name=ENST00000571722.3 | ||
|tss_classification=no | |||
|tss_id=hg_236423.1 | |tss_id=hg_236423.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |||
}} | }} | ||
Latest revision as of 12:37, 21 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 117 |
|---|---|
| Nearest PromoterID: | NM_024911 |
| Entrez ID: | 79971 |
| Nearest Unigene: | Hs.647659 |
| Nearest Refseq: | NM_024911 |
| Nearest Ensembl: | ENSG00000116729 |
| Gene Name: | small nucleolar RNA, C/D box 3B-2 |
| Gene Alias: | C1orf139|EVI|GPR177|MRP|mig-14 |
| Gene Description: | Wnt ligand secretion mediator |
| Gene Type: | protein-coding |
| CpG%: | 0.07 |
| GC%: | 0.606965 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.