TSS: Hg 101234.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=128692 |entrez_id=401535 |gc_percent=0.457711 |gene_alias=- |gene_description=chromosome 9 open reading frame 170 |gene_name=C9...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=NA | |||
|distance_to_tss=128692 | |distance_to_tss=128692 | ||
|end=87277341 | |||
|end_of_center_position=87277336 | |||
|entrez_id=401535 | |entrez_id=401535 | ||
|gc_percent=0.457711 | |gc_percent=0.457711 | ||
| Line 7: | Line 11: | ||
|gene_description=chromosome 9 open reading frame 170 | |gene_description=chromosome 9 open reading frame 170 | ||
|gene_name=C9orf170 | |gene_name=C9orf170 | ||
|gene_type= | |gene_type=ncRNA | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_161226 | ||
|nearest_refseq= | |nearest_refseq=NR_161226 | ||
|nearest_unigene=Hs.657740 | |nearest_unigene=Hs.657740 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=87277330 | |||
|start_of_center_position=87277335 | |||
|strand=- | |||
|tata_box=-93(CCTTAAATGAGC,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101234.1 | |tss_id=hg_101234.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:35, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 128692 |
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| Nearest PromoterID: | NR_161226 |
| Entrez ID: | 401535 |
| Nearest Unigene: | Hs.657740 |
| Nearest Refseq: | NR_161226 |
| Nearest Ensembl: | |
| Gene Name: | C9orf170 |
| Gene Alias: | - |
| Gene Description: | chromosome 9 open reading frame 170 |
| Gene Type: | ncRNA |
| CpG%: | 0.015 |
| GC%: | 0.457711 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -93(CCTTAAATGAGC,+,0.00) |