TSS: Hg 101243.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=55728 |entrez_id=1612 |gc_percent=0.338308 |gene_alias=DAPK |gene_description=death associated protein kinase 1 |gene_name=DAPK...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance_to_tss= | |distance=NA | ||
|entrez_id= | |distance_to_tss=809 | ||
|end=87554265 | |||
|end_of_center_position=87554264 | |||
|entrez_id=100506897 | |||
|gc_percent=0.338308 | |gc_percent=0.338308 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=DAPK1 intronic transcript 1 | ||
|gene_name=DAPK1 | |gene_name=DAPK1-IT1 | ||
|gene_type= | |gene_type=ncRNA | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000236709 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_146781 | ||
|nearest_refseq= | |nearest_refseq=NR_146781 | ||
|nearest_unigene=Hs. | |nearest_unigene=Hs.656160 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=87554261 | |||
|start_of_center_position=87554263 | |||
|strand=- | |||
|tata_box=-34(TAGTATAAAAGC,-,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101243.1 | |tss_id=hg_101243.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:35, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 809 |
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| Nearest PromoterID: | NR_146781 |
| Entrez ID: | 100506897 |
| Nearest Unigene: | Hs.656160 |
| Nearest Refseq: | NR_146781 |
| Nearest Ensembl: | ENSG00000236709 |
| Gene Name: | DAPK1-IT1 |
| Gene Alias: | - |
| Gene Description: | DAPK1 intronic transcript 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.338308 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -34(TAGTATAAAAGC,-,0.00) |