TSS: Hg 242897.1: Difference between revisions
From referenceTSS
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{{TSSDetail | {{TSSDetail | ||
|all_trans= | |PRTD-NY2= | ||
|all_trans=HGNC:32965 | |||
|chr=chr8 | |chr=chr8 | ||
|cpg_percent=0.11 | |cpg_percent=0.11 | ||
|distance= | |distance=-25 | ||
|distance_to_tss=- | |distance_to_tss=-109 | ||
|end= | |end=66925516 | ||
|end_of_center_position=66925515 | |||
|entrez_id=26166 | |entrez_id=26166 | ||
|gc_percent=0.726368 | |gc_percent=0.726368 | ||
|gene_alias=CT145 | |gene_alias=CT145{{!}}PRTD-NY2 | ||
|gene_description=regulator of G | |gene_description=regulator of G protein signaling 22 | ||
|gene_id= | |gene_id=641638 | ||
|gene_name= | |gene_name=small nucleolar RNA host gene 6 | ||
|gene_source=HGNC: | |gene_source=HGNC:32965 | ||
|gene_symbol= | |gene_symbol=SNHG6 | ||
|gene_synonyms= | |gene_synonyms=HBII-276HG NCRNA00058 U87HG | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC: | |hgnc_mgi_id=HGNC:32965 | ||
|nearest_ensembl=ENSG00000132554 | |nearest_ensembl=ENSG00000132554 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001286692 | ||
|nearest_refseq=NM_015668 | |nearest_refseq=NM_015668 | ||
|nearest_unigene=Hs.120021 | |nearest_unigene=Hs.120021 | ||
|num_trans= | |num_trans=641638 | ||
|species=human | |species=human | ||
|start= | |start=66925512 | ||
|start_of_center_position=66925514 | |||
|strand=- | |strand=- | ||
|transcript_name= | |transcript_name=ENST00000520348.5 ENST00000521399.5 ENST00000521127.1 AK057116 | ||
|tss_classification=yes | |tss_classification=yes | ||
|tss_id=hg_242897.1 | |tss_id=hg_242897.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 14:57, 21 July 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -109 |
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| Nearest PromoterID: | NM_001286692 |
| Entrez ID: | 26166 |
| Nearest Unigene: | Hs.120021 |
| Nearest Refseq: | NM_015668 |
| Nearest Ensembl: | ENSG00000132554 |
| Gene Name: | small nucleolar RNA host gene 6 |
| Gene Alias: | CT145|PRTD-NY2 |
| Gene Description: | regulator of G protein signaling 22 |
| Gene Type: | protein-coding |
| CpG%: | 0.11 |
| GC%: | 0.726368 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |
TSS expression
Expression data not found.