TSS: Hg 101270.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=-54620 |entrez_id=286223 |gc_percent=0.38806 |gene_alias=C9orf108|bA791O21.3 |gene_description=chromosome 9 open reading frame 4...") |
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{{TSSDetail | {{TSSDetail | ||
|bA791O21.3= | |||
|chr=chr9 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=NA | |||
|distance_to_tss=-54620 | |distance_to_tss=-54620 | ||
|end=88936253 | |||
|end_of_center_position=88936244 | |||
|entrez_id=286223 | |entrez_id=286223 | ||
|gc_percent=0.38806 | |gc_percent=0.38806 | ||
|gene_alias=C9orf108 | |gene_alias=C9orf108{{!}}bA791O21.3 | ||
|gene_description=chromosome 9 open reading frame 47 | |gene_description=chromosome 9 open reading frame 47 | ||
|gene_name=C9orf47 | |gene_name=C9orf47 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl= | |nearest_ensembl=ENSG00000213694 | ||
|nearest_promoter_id=NM_001142413 | |nearest_promoter_id=NM_001142413 | ||
|nearest_refseq=NM_001001938 | |nearest_refseq=NM_001001938 | ||
|nearest_unigene=Hs.585118 | |nearest_unigene=Hs.585118 | ||
|num_trans=0 | |||
|species=human | |||
|start=88936233 | |||
|start_of_center_position=88936243 | |||
|strand=- | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101270.1 | |tss_id=hg_101270.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:36, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -54620 |
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| Nearest PromoterID: | NM_001142413 |
| Entrez ID: | 286223 |
| Nearest Unigene: | Hs.585118 |
| Nearest Refseq: | NM_001001938 |
| Nearest Ensembl: | ENSG00000213694 |
| Gene Name: | C9orf47 |
| Gene Alias: | C9orf108|bA791O21.3 |
| Gene Description: | chromosome 9 open reading frame 47 |
| Gene Type: | protein-coding |
| CpG%: | 0.01 |
| GC%: | 0.38806 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |