TSS: Hg 101288.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.095 |distance_to_tss=-277 |entrez_id=1164 |gc_percent=0.636816 |gene_alias=CKSHS2 |gene_description=CDC28 protein kinase regulatory subunit 2 |gene_...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=LF331638:-334 MA567215:-334 LF331639:-421 MA567216:-421 | |||
|chr=chr9 | |||
|cpg_percent=0.095 | |cpg_percent=0.095 | ||
|distance=-334 | |||
|distance_to_tss=-277 | |distance_to_tss=-277 | ||
|end=89310931 | |||
|end_of_center_position=89310918 | |||
|entrez_id=1164 | |entrez_id=1164 | ||
|gc_percent=0.636816 | |gc_percent=0.636816 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_001827 | |nearest_refseq=NM_001827 | ||
|nearest_unigene=Hs.83758 | |nearest_unigene=Hs.83758 | ||
|num_trans=4 | |||
|species=human | |||
|start=89310904 | |||
|start_of_center_position=89310917 | |||
|strand=- | |||
|transcript_name=LF331638 MA567215 | |||
|tss_classification=yes | |||
|tss_id=hg_101288.1 | |tss_id=hg_101288.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:36, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -277 |
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| Nearest PromoterID: | NM_001827 |
| Entrez ID: | 1164 |
| Nearest Unigene: | Hs.83758 |
| Nearest Refseq: | NM_001827 |
| Nearest Ensembl: | ENSG00000123975 |
| Gene Name: | CKS2 |
| Gene Alias: | CKSHS2 |
| Gene Description: | CDC28 protein kinase regulatory subunit 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.095 |
| GC%: | 0.636816 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |