TSS: Hg 101311.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.015 |distance_to_tss=59116 |entrez_id=79048 |gc_percent=0.323383 |gene_alias=SBP2 |gene_description=SECIS binding protein 2 |gene_name=SECISBP2 |gen...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=LF331647:-378 MA567224:-378 | |||
|chr=chr9 | |||
|cpg_percent=0.015 | |cpg_percent=0.015 | ||
|distance=-378 | |||
|distance_to_tss=59116 | |distance_to_tss=59116 | ||
|end=89377974 | |||
|end_of_center_position=89377968 | |||
|entrez_id=79048 | |entrez_id=79048 | ||
|gc_percent=0.323383 | |gc_percent=0.323383 | ||
| Line 12: | Line 17: | ||
|nearest_refseq=NM_024077 | |nearest_refseq=NM_024077 | ||
|nearest_unigene=Hs.59804 | |nearest_unigene=Hs.59804 | ||
|num_trans=2 | |||
|species=human | |||
|start=89377960 | |||
|start_of_center_position=89377967 | |||
|strand=- | |||
|transcript_name=LF331647 MA567224 | |||
|tss_classification=yes | |||
|tss_id=hg_101311.1 | |tss_id=hg_101311.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:37, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 59116 |
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| Nearest PromoterID: | NM_001282690 |
| Entrez ID: | 79048 |
| Nearest Unigene: | Hs.59804 |
| Nearest Refseq: | NM_024077 |
| Nearest Ensembl: | ENSG00000187742 |
| Gene Name: | SECISBP2 |
| Gene Alias: | SBP2 |
| Gene Description: | SECIS binding protein 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.015 |
| GC%: | 0.323383 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |