TSS: Hg 101453.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.17 |distance_to_tss=30 |entrez_id=23299 |gc_percent=0.810945 |gene_alias=SMALED2|bA526D8.1 |gene_description=BICD cargo adaptor 2 |gene_name=BICD2 |...") |
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{{TSSDetail | {{TSSDetail | ||
|all_trans=KJ893354:20 AY052562:-23 ENST00000375512.3:-34 BC073970:-38 AB014599:44 ENST00000356884.11:-55 NM_015250:-55 NM_001003800:-55 | |||
|bA526D8.1= | |||
|chr=chr9 | |||
|cpg_percent=0.17 | |cpg_percent=0.17 | ||
|distance_to_tss= | |distance=20 | ||
|distance_to_tss=62 | |||
|end=92764778 | |||
|end_of_center_position=92764772 | |||
|entrez_id=23299 | |entrez_id=23299 | ||
|gc_percent=0.810945 | |gc_percent=0.810945 | ||
|gene_alias=SMALED2 | |gene_alias=SMALED2{{!}}SMALED2A{{!}}SMALED2B{{!}}bA526D8.1 | ||
|gene_description=BICD cargo adaptor 2 | |gene_description=BICD cargo adaptor 2 | ||
|gene_name=BICD2 | |gene_name=BICD2 | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000185963 | |nearest_ensembl=ENSG00000185963 | ||
|nearest_promoter_id= | |nearest_promoter_id=NM_001003800 | ||
|nearest_refseq=NM_015250 | |nearest_refseq=NM_015250 | ||
|nearest_unigene=Hs.436939 | |nearest_unigene=Hs.436939 | ||
|num_trans=8 | |||
|species=human | |||
|start=92764764 | |||
|start_of_center_position=92764771 | |||
|strand=- | |||
|transcript_name=KJ893354 | |||
|tss_classification=yes | |||
|tss_id=hg_101453.1 | |tss_id=hg_101453.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:40, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 62 |
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| Nearest PromoterID: | NM_001003800 |
| Entrez ID: | 23299 |
| Nearest Unigene: | Hs.436939 |
| Nearest Refseq: | NM_015250 |
| Nearest Ensembl: | ENSG00000185963 |
| Gene Name: | BICD2 |
| Gene Alias: | SMALED2|SMALED2A|SMALED2B|bA526D8.1 |
| Gene Description: | BICD cargo adaptor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.17 |
| GC%: | 0.810945 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |