TSS: Rfhg 36188.1: Difference between revisions
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000410103.1) |ccre_category=pELS |ccre_description=pELS,CTCF-bound (EH38D3218066,EH38E2057660) |chr=chr2 |cpg_percent=0.000000 |d...") |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=NM_001395259.2:0 ENST00000482782.5:-20 ENST00000495511.1:-106 NM_001395258.2:-220 NM_001395260.2:249 NM_001003683.3:249 AK294239:285 ENST00000410103.1:327 U40370:327 AF110236:327 AF110240:367 NM_001395265.2:404 NM_001395261.2:404 NM_001258312.3:404 NM_001395262.1:404 NM_001395266.1:404 ENST00000435564.5:488 BC022480:488 | ||
|annotation=promoter-TSS (NM_001003683) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D3218066,EH38E2057660) | |ccre_description=pELS,CTCF-bound (EH38D3218066,EH38E2057660) | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001003683) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=-230 | ||
|end=182523086 | |end=182523086 | ||
|entrez_id= | |entrez_id=5136 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.363636 | |gc_percent=0.363636 | ||
|gene_alias= | |gene_alias=CAM-PDE 1A{{!}}CAM-PDE-1A{{!}}HCAM-1{{!}}HCAM1{{!}}HSPDE1A | ||
|gene_description= | |gene_description=phosphodiesterase 1A | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000115252 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001003683 | ||
|nearest_unigene= | |nearest_refseq=NM_005019 | ||
|nearest_transcripts=ENST00000482782.5:-20 ENST00000495511.1:-106 NM_001395258.2:-220 NM_001395260.2:249 NM_001003683.3:249 AK294239:285 ENST00000410103.1:327 U40370:327 AF110236:327 AF110240:367 NM_001395265.2:404 NM_001395261.2:404 NM_001258312.3:404 NM_001395262.1:404 NM_001395266.1:404 ENST00000435564.5:488 BC022480:488 | |||
|nearest_unigene=Hs.191046 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=182523065 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 10:45, 15 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3218066,EH38E2057660) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -230 |
|---|---|
| Nearest PromoterID: | NM_001003683 |
| Entrez ID: | 5136 |
| Nearest Unigene: | Hs.191046 |
| Nearest Refseq: | NM_005019 |
| Nearest Ensembl: | ENSG00000115252 |
| Gene Name: | |
| Gene Alias: | CAM-PDE 1A|CAM-PDE-1A|HCAM-1|HCAM1|HSPDE1A |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.363636 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
Property "Nearest transcripts" (as page type) with input value "ENST00000482782.5:-20 ENST00000495511.1:-106 NM_001395258.2:-220 NM_001395260.2:249 NM_001003683.3:249 AK294239:285 ENST00000410103.1:327 U40370:327 AF110236:327 AF110240:367 NM_001395265.2:404 NM_001395261.2:404 NM_001258312.3:404 NM_001395262.1:404 NM_001395266.1:404 ENST00000435564.5:488 BC022480:488" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.