TSS: Hg 101500.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.055 |distance_to_tss=494 |entrez_id=158293 |gc_percent=0.452736 |gene_alias=C9orf10OS |gene_description=family with sequence similarity 120A opposit...") |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{TSSDetail | {{TSSDetail | ||
|all_trans=DQ599685:-9 AK309269:-36 ENST00000483149.6:-139 ENST00000520470.5:-139 BC107135:-139 BC107136:-139 BC113074:-139 BC160143:369 DQ579422:398 ENST00000375412.11:-463 NR_136231:-463 NM_198841:-463 AK056096:-474 NR_136229:-483 NR_136230:-483 | |||
|chr=chr9 | |||
|cpg_percent=0.055 | |cpg_percent=0.055 | ||
|distance_to_tss= | |distance=-9 | ||
|distance_to_tss=483 | |||
|end=93453118 | |||
|end_of_center_position=93453098 | |||
|entrez_id=158293 | |entrez_id=158293 | ||
|gc_percent=0.452736 | |gc_percent=0.452736 | ||
Line 9: | Line 14: | ||
|gene_type=protein-coding | |gene_type=protein-coding | ||
|nearest_ensembl=ENSG00000188938 | |nearest_ensembl=ENSG00000188938 | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_136231 | ||
|nearest_refseq=NM_198841 | |nearest_refseq=NM_198841 | ||
|nearest_unigene=Hs.350364 | |nearest_unigene=Hs.350364 | ||
|num_trans=15 | |||
|species=human | |||
|start=93453077 | |||
|start_of_center_position=93453097 | |||
|strand=- | |||
|transcript_name=DQ599685 | |||
|tss_classification=yes | |||
|tss_id=hg_101500.1 | |tss_id=hg_101500.1 | ||
|tss_score=1 | |||
}} | }} |
Latest revision as of 16:41, 15 June 2021
Basic information about the TSS
|
| |||||||||||||
TSS cluster detected* |
---|
* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
|
|
TATA-Box annotation
Distance to TSS: | 483 |
---|---|
Nearest PromoterID: | NR_136231 |
Entrez ID: | 158293 |
Nearest Unigene: | Hs.350364 |
Nearest Refseq: | NM_198841 |
Nearest Ensembl: | ENSG00000188938 |
Gene Name: | FAM120AOS |
Gene Alias: | C9orf10OS |
Gene Description: | family with sequence similarity 120A opposite strand |
Gene Type: | protein-coding |
CpG%: | 0.055 |
GC%: | 0.452736 |
TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): |