TSS: Rfhg 37610.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (NM_001114132, intron 45 of 54) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr2 | |chr=chr2 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_001114132, intron 45 of 54) | ||
|distance=-7 | |distance=-7 | ||
|distance_to_tss=- | |distance_to_tss=-47752 | ||
|end=203190690 | |end=203190690 | ||
|entrez_id= | |entrez_id=57404 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.000000 | |gc_percent=0.000000 | ||
|gene_alias= | |gene_alias=CYP-M | ||
|gene_description= | |gene_description=cytochrome P450 family 20 subfamily A member 1 | ||
|gene_id=100130447 | |gene_id=100130447 | ||
|gene_name= | |gene_name=CYP20A1 | ||
|gene_source=HGNC:36926 | |gene_source=HGNC:36926 | ||
|gene_symbol=RPL12P16 | |gene_symbol=RPL12P16 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:36926 | |hgnc_mgi_id=HGNC:36926 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000119004 | ||
|nearest_refseq= | |nearest_promoter_id=NM_177538 | ||
|nearest_unigene= | |nearest_refseq=NM_020674 | ||
|nearest_unigene=Hs.446065 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}DRA000914 | |||
|species=human | |species=human | ||
|start= | |start=203190689 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 13:51, 8 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5|DRA000914 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -47752 |
|---|---|
| Nearest PromoterID: | NM_177538 |
| Entrez ID: | 57404 |
| Nearest Unigene: | Hs.446065 |
| Nearest Refseq: | NM_020674 |
| Nearest Ensembl: | ENSG00000119004 |
| Gene Name: | CYP20A1 |
| Gene Alias: | CYP-M |
| Gene Description: | cytochrome P450 family 20 subfamily A member 1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.