TSS: Rfhg 4286.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=TTS (ENST00000387069.1) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2144234,EH38E1332454) |chr=chr1 |cpg_percent=0.000000 |detailed_ann...") |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=TTS ( | |all_trans=LQ660982:-149 LY536149:-149 LZ234272:-149 MA363522:-149 ENST00000602813.1:-190 NR_004407.1:-190 MA813924:-190 | ||
|annotation=TTS (NR_146731) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2144234,EH38E1332454) | |ccre_description=PLS,CTCF-bound (EH38D2144234,EH38E1332454) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=TTS (NR_146731) | ||
|distance=-149 | |distance=-149 | ||
|distance_to_tss=193 | |distance_to_tss=193 | ||
|end=28648796 | |end=28648796 | ||
|entrez_id= | |entrez_id=26824 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.285714 | |gc_percent=0.285714 | ||
|gene_alias= | |gene_alias=RNU11-1{{!}}U11 | ||
|gene_description= | |gene_description=RNA, U11 small nuclear | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 21: | Line 22: | ||
|gene_type=snRNA | |gene_type=snRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000274978 | ||
|nearest_refseq= | |nearest_promoter_id=NR_004407 | ||
|nearest_unigene= | |nearest_refseq=NR_004407 | ||
|nearest_transcripts=ENST00000602813.1:-190 NR_004407.1:-190 MA813924:-190 | |||
|nearest_unigene=Hs.640266 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=28648790 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 12:50, 15 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2144234,EH38E1332454) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 193 |
|---|---|
| Nearest PromoterID: | NR_004407 |
| Entrez ID: | 26824 |
| Nearest Unigene: | Hs.640266 |
| Nearest Refseq: | NR_004407 |
| Nearest Ensembl: | ENSG00000274978 |
| Gene Name: | |
| Gene Alias: | RNU11-1|U11 |
| Gene Type: | snRNA |
| CpG%: | 0.000000 |
| GC%: | 0.285714 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |