TSS: Rfhg 45572.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=exon ( | |all_trans=AK023239:17 DQ573450:43 | ||
|annotation=exon (NM_014703, exon 15 of 26) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=exon (NM_014703, exon 15 of 26) | ||
|distance=17 | |distance=17 | ||
|distance_to_tss= | |distance_to_tss=29682 | ||
|end=51420967 | |end=51420967 | ||
|entrez_id= | |entrez_id=29890 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=1.000000 | |gc_percent=1.000000 | ||
|gene_alias= | |gene_alias=HUMAGCGB{{!}}HsOTT3{{!}}OTT3 | ||
|gene_description= | |gene_description=RNA binding motif protein 15B | ||
|gene_id=9730 | |gene_id=9730 | ||
|gene_name=DDB1 and CUL4 associated factor 1 | |gene_name=DDB1 and CUL4 associated factor 1 | ||
| Line 19: | Line 20: | ||
|gene_symbol=DCAF1 | |gene_symbol=DCAF1 | ||
|gene_synonyms=KIAA0800 MGC102804 | |gene_synonyms=KIAA0800 MGC102804 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:30911 | |hgnc_mgi_id=HGNC:30911 | ||
|nearest_ensembl= | |methods=TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000259956 | ||
|nearest_refseq= | |nearest_promoter_id=NM_013286 | ||
|nearest_unigene= | |nearest_refseq=NM_013286 | ||
|nearest_transcripts=DQ573450:43 | |||
|nearest_unigene=Hs.118738 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start= | |start=51420967 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 13:42, 15 March 2025
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | 29682 |
|---|---|
| Nearest PromoterID: | NM_013286 |
| Entrez ID: | 29890 |
| Nearest Unigene: | Hs.118738 |
| Nearest Refseq: | NM_013286 |
| Nearest Ensembl: | ENSG00000259956 |
| Gene Name: | DDB1 and CUL4 associated factor 1 |
| Gene Alias: | HUMAGCGB|HsOTT3|OTT3 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 1.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.