TSS: Hg 101511.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.01 |distance_to_tss=-15285 |entrez_id=101928099 |gc_percent=0.348259 |gene_alias=PCAN-R2 |gene_description=prostate cancer associated transcript 7 (...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.01 | |cpg_percent=0.01 | ||
|distance=NA | |||
|distance_to_tss=-15285 | |distance_to_tss=-15285 | ||
|end=94539761 | |||
|end_of_center_position=94539760 | |||
|entrez_id=101928099 | |entrez_id=101928099 | ||
|gc_percent=0.348259 | |gc_percent=0.348259 | ||
|gene_alias=PCAN-R2 | |gene_alias=PCAN-R2 | ||
|gene_description=prostate cancer associated transcript 7 | |gene_description=prostate cancer associated transcript 7 | ||
|gene_name=PCAT7 | |gene_name=PCAT7 | ||
|gene_type=ncRNA | |gene_type=ncRNA | ||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id=NR_121569 | |nearest_promoter_id=NR_121569 | ||
|nearest_refseq=NR_121566 | |nearest_refseq=NR_121566 | ||
|nearest_unigene=Hs.674409 | |nearest_unigene=Hs.674409 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=94539758 | |||
|start_of_center_position=94539759 | |||
|strand=- | |||
|tata_box=62(GTCTCTAAATAG,-,0.00),64(CTCTAAATAGCC,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101511.1 | |tss_id=hg_101511.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:42, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -15285 |
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| Nearest PromoterID: | NR_121569 |
| Entrez ID: | 101928099 |
| Nearest Unigene: | Hs.674409 |
| Nearest Refseq: | NR_121566 |
| Nearest Ensembl: | |
| Gene Name: | PCAT7 |
| Gene Alias: | PCAN-R2 |
| Gene Description: | prostate cancer associated transcript 7 |
| Gene Type: | ncRNA |
| CpG%: | 0.01 |
| GC%: | 0.348259 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 62(GTCTCTAAATAG,-,0.00),64(CTCTAAATAGCC,+,0.00) |