TSS: Rfhg 48031.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_024407) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3461320,EH38E2222500) | |ccre_description=PLS,CTCF-bound (EH38D3461320,EH38E2222500) | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.102041 | |cpg_percent=0.102041 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_024407) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=31 | ||
|end=101676486 | |end=101676486 | ||
|entrez_id= | |entrez_id=100009676 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.740000 | |gc_percent=0.740000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=ZBTB11 antisense RNA 1 | ||
|gene_id=100009676 | |gene_id=100009676 | ||
|gene_name=ZBTB11 | |gene_name=ZBTB11-AS1 | ||
|gene_source=HGNC:48573 | |gene_source=HGNC:48573 | ||
|gene_symbol=ZBTB11-AS1 | |gene_symbol=ZBTB11-AS1 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:48573 | |hgnc_mgi_id=HGNC:48573 | ||
|nearest_ensembl= | |methods=NETCAGE{{!}}CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000256628 | ||
|nearest_refseq= | |nearest_promoter_id=NR_024407 | ||
|nearest_unigene= | |nearest_refseq=NR_024407 | ||
|nearest_unigene=Hs.743292 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start= | |start=101676437 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000609682.1 AK022880 BC016930 | |transcript_name=ENST00000609682.1 AK022880 BC016930 | ||
|tss_cluster_detected= | |tss_cluster_detected=2 | ||
|tss_id=rfhg_48031.1 | |tss_id=rfhg_48031.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 17:03, 8 December 2023
Basic information about the TSS
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| Source datasets | PRJNA4843412|DRA013844 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE|CAGE | |||||||||||||
| TSS cluster detected* | 2 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3461320,EH38E2222500) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 31 |
|---|---|
| Nearest PromoterID: | NR_024407 |
| Entrez ID: | 100009676 |
| Nearest Unigene: | Hs.743292 |
| Nearest Refseq: | NR_024407 |
| Nearest Ensembl: | ENSG00000256628 |
| Gene Name: | ZBTB11-AS1 |
| Gene Alias: | - |
| Gene Description: | ZBTB11 antisense RNA 1 |
| Gene Type: | ncRNA |
| CpG%: | 0.102041 |
| GC%: | 0.740000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.