TSS: Rfhg 50809.1: Difference between revisions
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000333188.9) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D3491516,EH38E2242450) |chr=chr3 |cpg_percent=0.000000 |det...") |
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000662234.1:0 ENST00000658348.1:13 ENST00000653359.1:-16 NR_121608.1:16 NR_121609.1:16 ENST00000504670.6:28 ENST00000507362.5:31 ENST00000512622.1:43 ENST00000510068.5:51 ENST00000515247.5:53 ENST00000660194.1:58 ENST00000514729.1:89 ENST00000655667.1:89 ENST00000661884.1:212 | ||
|annotation=promoter-TSS (NM_004766) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3491516,EH38E2242450) | |ccre_description=PLS,CTCF-bound (EH38D3491516,EH38E2242450) | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_004766) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-21 | ||
|end=139389787 | |end=139389787 | ||
|entrez_id= | |entrez_id=100507291 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.545455 | |gc_percent=0.545455 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=uncharacterized LOC100507291 | ||
|gene_id=100507291 | |gene_id=100507291 | ||
|gene_name=COPB2 divergent transcript | |gene_name=COPB2 divergent transcript | ||
| Line 19: | Line 20: | ||
|gene_symbol=COPB2-DT | |gene_symbol=COPB2-DT | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000248932 | ||
|nearest_refseq= | |nearest_promoter_id=NR_121608 | ||
|nearest_unigene= | |nearest_refseq=NR_121608 | ||
|nearest_transcripts=ENST00000658348.1:13 ENST00000653359.1:-16 NR_121608.1:16 NR_121609.1:16 ENST00000504670.6:28 ENST00000507362.5:31 ENST00000512622.1:43 ENST00000510068.5:51 ENST00000515247.5:53 ENST00000660194.1:58 ENST00000514729.1:89 ENST00000655667.1:89 ENST00000661884.1:212 | |||
|nearest_unigene=Hs.97661 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=139389777 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 15:22, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3491516,EH38E2242450) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -21 |
|---|---|
| Nearest PromoterID: | NR_121608 |
| Entrez ID: | 100507291 |
| Nearest Unigene: | Hs.97661 |
| Nearest Refseq: | NR_121608 |
| Nearest Ensembl: | ENSG00000248932 |
| Gene Name: | COPB2 divergent transcript |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.545455 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Property "Nearest transcripts" (as page type) with input value "ENST00000658348.1:13 ENST00000653359.1:-16 NR_121608.1:16 NR_121609.1:16 ENST00000504670.6:28 ENST00000507362.5:31 ENST00000512622.1:43 ENST00000510068.5:51 ENST00000515247.5:53 ENST00000660194.1:58 ENST00000514729.1:89 ENST00000655667.1:89 ENST00000661884.1:212" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.