TSS: Rfhg 51739.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
| | |all_trans=NM_001387821.1:0 NM_001387831.1:0 NM_001387822.1:0 NM_001376845.1:0 NM_001376840.1:0 NM_001376839.1:0 NM_001387797.1:0 NM_001387811.1:0 NM_001387801.1:0 NM_001387788.1:0 NM_001387792.1:0 NM_001376826.1:0 NM_001387785.1:0 NM_001387781.1:0 NM_001376819.1:0 NR_170697.1:0 ENST00000477171.1:189 | ||
|annotation=Intergenic | |||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D3501940,EH38E2249189) | |ccre_description=dELS,CTCF-bound (EH38D3501940,EH38E2249189) | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=Intergenic | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-25302 | ||
|end=152243639 | |end=152243639 | ||
|entrez_id= | |entrez_id=4154 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.320000 | |gc_percent=0.320000 | ||
|gene_alias= | |gene_alias=EXP{{!}}MBNL | ||
|gene_description= | |gene_description=muscleblind like splicing regulator 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000152601 | ||
|nearest_refseq= | |nearest_promoter_id=NM_021038 | ||
|nearest_unigene= | |nearest_refseq=NM_021038 | ||
|nearest_transcripts=ENST00000477171.1:189 | |||
|nearest_unigene=Hs.201858 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=152243615 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 15:40, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D3501940,EH38E2249189) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -25302 |
|---|---|
| Nearest PromoterID: | NM_021038 |
| Entrez ID: | 4154 |
| Nearest Unigene: | Hs.201858 |
| Nearest Refseq: | NM_021038 |
| Nearest Ensembl: | ENSG00000152601 |
| Gene Name: | |
| Gene Alias: | EXP|MBNL |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.320000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |