TSS: Rfhg 53266.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NR_075091, intron 3 of 7) | ||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NR_075091, intron 3 of 7) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=36437 | ||
|end=181268176 | |end=181268176 | ||
|entrez_id= | |entrez_id=101954271 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.000000 | |gc_percent=0.000000 | ||
|gene_alias= | |gene_alias=U6-9 | ||
|gene_description= | |gene_description=RNA, U6 small nuclear 9 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=RNU6-9 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=snRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000207507 | ||
|nearest_refseq= | |nearest_promoter_id=NR_104080 | ||
|nearest_unigene= | |nearest_refseq=NR_104080 | ||
|nearest_unigene= | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=181268173 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 18:41, 8 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 36437 |
|---|---|
| Nearest PromoterID: | NR_104080 |
| Entrez ID: | 101954271 |
| Nearest Unigene: | |
| Nearest Refseq: | NR_104080 |
| Nearest Ensembl: | ENSG00000207507 |
| Gene Name: | RNU6-9 |
| Gene Alias: | U6-9 |
| Gene Description: | RNA, U6 small nuclear 9 |
| Gene Type: | snRNA |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |