TSS: Rfhg 53290.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=non-coding (NR_004053, exon 3 of 5) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3523521,EH38E2262635) | |ccre_description=PLS,CTCF-bound (EH38D3523521,EH38E2262635) | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=non-coding (NR_004053, exon 3 of 5) | ||
|distance= | |distance= | ||
|distance_to_tss=- | |distance_to_tss=-12148 | ||
|end=181699781 | |end=181699781 | ||
|entrez_id= | |entrez_id=6657 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.444444 | |gc_percent=0.444444 | ||
|gene_alias= | |gene_alias=ANOP3{{!}}MCOPS3 | ||
|gene_description= | |gene_description=SRY-box transcription factor 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=SOX2 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000181449 | ||
|nearest_refseq= | |nearest_promoter_id=NM_003106 | ||
|nearest_unigene= | |nearest_refseq=NM_003106 | ||
|nearest_unigene=Hs.518438 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=181699773 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 18:41, 8 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3523521,EH38E2262635) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -12148 |
|---|---|
| Nearest PromoterID: | NM_003106 |
| Entrez ID: | 6657 |
| Nearest Unigene: | Hs.518438 |
| Nearest Refseq: | NM_003106 |
| Nearest Ensembl: | ENSG00000181449 |
| Gene Name: | SOX2 |
| Gene Alias: | ANOP3|MCOPS3 |
| Gene Description: | SRY-box transcription factor 2 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.444444 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |