TSS: Rfhg 53290.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000593330.1)
|annotation=non-coding (NR_004053, exon 3 of 5)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D3523521,EH38E2262635)
|ccre_description=PLS,CTCF-bound (EH38D3523521,EH38E2262635)
|chr=chr3
|chr=chr3
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=sense_overlapping-intron (ENST00000599082.2, intron 1 of 1)
|detailed_annotation=non-coding (NR_004053, exon 3 of 5)
|distance=
|distance=
|distance_to_tss=-60
|distance_to_tss=-12148
|end=181699781
|end=181699781
|entrez_id=ENSG00000242808
|entrez_id=6657
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.444444
|gc_percent=0.444444
|gene_alias=
|gene_alias=ANOP3{{!}}MCOPS3
|gene_description=
|gene_description=SRY-box transcription factor 2
|gene_id=
|gene_id=
|gene_name=
|gene_name=SOX2
|gene_source=
|gene_source=
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=sense_overlapping
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000628810.2
|nearest_ensembl=ENSG00000181449
|nearest_refseq=
|nearest_promoter_id=NM_003106
|nearest_unigene=ENST00000628343
|nearest_refseq=NM_003106
|nearest_unigene=Hs.518438
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=181699772
|start=181699773
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 18:41, 8 December 2023

Basic information about the TSS


TSS ID:rfhg_53290.1
Species:human
Chr:chr3
Start:181699773
End:181699781
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:PLS,CTCF-bound (EH38D3523521,EH38E2262635)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Transcript_name:
Distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Gene_name:SOX2
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation


Distance to TSS:-12148
Nearest PromoterID:NM_003106
Entrez ID:6657
Nearest Unigene:Hs.518438
Nearest Refseq:NM_003106
Nearest Ensembl:ENSG00000181449
Gene Name:SOX2
Gene Alias:ANOP3|MCOPS3
Gene Description:SRY-box transcription factor 2
Gene Type:protein-coding
CpG%:0.000000
GC%:0.444444
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):