TSS: Rfhg 53294.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |annotation=intron (NR_075089, intron 3 of 3) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D3523548,EH38E2262662) | |ccre_description=dELS,CTCF-bound (EH38D3523548,EH38E2262662) | ||
|chr=chr3 | |chr=chr3 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NR_075089, intron 3 of 3) | ||
|distance=396 | |distance=396 | ||
|distance_to_tss=- | |distance_to_tss=-2287 | ||
|end=181709641 | |end=181709641 | ||
|entrez_id= | |entrez_id=6657 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.142857 | |gc_percent=0.142857 | ||
|gene_alias= | |gene_alias=ANOP3{{!}}MCOPS3 | ||
|gene_description= | |gene_description=SRY-box transcription factor 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=SOX2 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000181449 | ||
|nearest_refseq= | |nearest_promoter_id=NM_003106 | ||
|nearest_unigene= | |nearest_refseq=NM_003106 | ||
|nearest_unigene=Hs.518438 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=181709635 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= |
Latest revision as of 18:41, 8 December 2023
Basic information about the TSS
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Source datasets | FANTOM5 | |||||||||||||
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Protocol | CAGE | |||||||||||||
TSS cluster detected* | 1 |
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
Description: | dELS,CTCF-bound (EH38D3523548,EH38E2262662) |
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Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
Distance to TSS: | -2287 |
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Nearest PromoterID: | NM_003106 |
Entrez ID: | 6657 |
Nearest Unigene: | Hs.518438 |
Nearest Refseq: | NM_003106 |
Nearest Ensembl: | ENSG00000181449 |
Gene Name: | SOX2 |
Gene Alias: | ANOP3|MCOPS3 |
Gene Description: | SRY-box transcription factor 2 |
Gene Type: | protein-coding |
CpG%: | 0.000000 |
GC%: | 0.142857 |
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |