TSS: Rfhg 55131.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000503185.5) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D3539075,EH38E2274176) |chr=chr4 |cpg_percent=0.072727 |det...") |
No edit summary |
||
| (One intermediate revision by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |annotation=promoter-TSS (NR_036511) | ||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3539075,EH38E2274176) | |ccre_description=PLS,CTCF-bound (EH38D3539075,EH38E2274176) | ||
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.072727 | |cpg_percent=0.072727 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_036511) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=12 | ||
|end=781864 | |end=781864 | ||
|entrez_id= | |entrez_id=100129917 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.660714 | |gc_percent=0.660714 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=uncharacterized LOC100129917 | ||
|gene_id=100129917 | |gene_id=100129917 | ||
|gene_name= | |gene_name=LOC100129917 | ||
|gene_source=HGNC:56108 | |gene_source=HGNC:56108 | ||
|gene_symbol=PCGF3-AS1 | |gene_symbol=PCGF3-AS1 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:56108 | |hgnc_mgi_id=HGNC:56108 | ||
|nearest_ensembl= | |methods=CAGE{{!}}NETCAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000249592 | ||
|nearest_refseq= | |nearest_promoter_id=NR_036512 | ||
|nearest_unigene= | |nearest_refseq=NR_036511 | ||
|nearest_unigene=Hs.731755 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}PRJNA4843412{{!}}DRA013844 | |||
|species=human | |species=human | ||
|start= | |start=781809 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=BC040652 AK055583 | |transcript_name=BC040652 AK055583 | ||
|tss_cluster_detected=3 | |||
|tss_id=rfhg_55131.1 | |tss_id=rfhg_55131.1 | ||
|tss_id_v3=hg_51005.1;hg_51006.1 | |tss_id_v3=hg_51005.1;hg_51006.1 | ||
Latest revision as of 19:15, 8 December 2023
Basic information about the TSS
|
| |||||||||||||||
| Source datasets | FANTOM5|PRJNA4843412|DRA013844 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|NETCAGE | |||||||||||||||
| TSS cluster detected* | 3 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3539075,EH38E2274176) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | 12 |
|---|---|
| Nearest PromoterID: | NR_036512 |
| Entrez ID: | 100129917 |
| Nearest Unigene: | Hs.731755 |
| Nearest Refseq: | NR_036511 |
| Nearest Ensembl: | ENSG00000249592 |
| Gene Name: | LOC100129917 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100129917 |
| Gene Type: | ncRNA |
| CpG%: | 0.072727 |
| GC%: | 0.660714 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.