TSS: Rfhg 61821.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000379645.8:0 NM_001130698.2:0 NM_001366479.2:0 AY865574:258 | ||
|annotation=promoter-TSS (NM_001366479) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr4 | |chr=chr4 | ||
|cpg_percent=0.057143 | |cpg_percent=0.057143 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001366479) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=13 | ||
|end=121952082 | |end=121952082 | ||
|entrez_id= | |entrez_id=7222 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.591549 | |gc_percent=0.591549 | ||
|gene_alias= | |gene_alias=SCA41{{!}}TRP3 | ||
|gene_description= | |gene_description=transient receptor potential cation channel subfamily C member 3 | ||
|gene_id=7222 | |gene_id=7222 | ||
|gene_name=transient receptor potential cation channel subfamily C member 3 | |gene_name=transient receptor potential cation channel subfamily C member 3 | ||
| Line 19: | Line 20: | ||
|gene_symbol=TRPC3 | |gene_symbol=TRPC3 | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:12335 | |hgnc_mgi_id=HGNC:12335 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000138741 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001130698 | ||
|nearest_unigene= | |nearest_refseq=NM_003305 | ||
|nearest_transcripts=AY865574:258 | |||
|nearest_unigene=Hs.150981 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=121952012 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 18:53, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | 13 |
|---|---|
| Nearest PromoterID: | NM_001130698 |
| Entrez ID: | 7222 |
| Nearest Unigene: | Hs.150981 |
| Nearest Refseq: | NM_003305 |
| Nearest Ensembl: | ENSG00000138741 |
| Gene Name: | transient receptor potential cation channel subfamily C member 3 |
| Gene Alias: | SCA41|TRP3 |
| Gene Type: | protein-coding |
| CpG%: | 0.057143 |
| GC%: | 0.591549 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.