TSS: Rfhg 62651.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000429670.3) |ccre_category=N |ccre_description=N |chr=chr4 |cpg_percent=0.000000 |detailed_annotation=protein_coding-promoter-TS...")
 
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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000429670.3)
|all_trans=ENST00000508618.5:-2 ENST00000508841.1:-2 NM_001304382.1:-2 ENST00000506679.5:4 X08055:4 ENST00000429670.3:6 ENST00000507009.5:6 BC069310:6 ENST00000642935.1:10 ENST00000513128.5:19 ENST00000505583.5:19 ENST00000506516.6:19 ENST00000513557.5:19 ENST00000513677.5:19 ENST00000511198.5:19 ENST00000504951.6:19 ENST00000510196.6:19 EU338223:19 EU338224:19 EU338225:19 EU338226:19 EU338227:19 EU338228:19 EU338229:19 EU338230:19 EU338235:19 EU338236:19 EU338237:19 EU338238:19 BC121077:22 BC121078:22 ENST00000502664.6:-37 NM_002100.6:-37 ENST00000503255.5:41 J02982:46 ENST00000638448.1:56 U05255:56 AY950609:56 AY950610:56 AY950611:56 AY950612:56 HQ448418:56 KJ891317:56 KJ896951:56 KR711936:56 AY509882:56 AY509883:56
|annotation=promoter-TSS (NM_001304382)
|ccre_category=N
|ccre_category=N
|ccre_description=N
|ccre_description=N
|chr=chr4
|chr=chr4
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000429670.3)
|detailed_annotation=promoter-TSS (NM_001304382)
|distance=-2
|distance=-2
|distance_to_tss=2
|distance_to_tss=2
|end=144019343
|end=144019343
|entrez_id=ENSG00000250361
|entrez_id=2994
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.000000
|gc_percent=0.000000
|gene_alias=
|gene_alias=CD235b{{!}}GPB{{!}}GYP{{!}}GYPA{{!}}MNS{{!}}PAS-3{{!}}SS
|gene_description=
|gene_description=glycophorin B (MNS blood group)
|gene_id=2994
|gene_id=2994
|gene_name=glycophorin B (MNS blood group)
|gene_name=glycophorin B (MNS blood group)
Line 19: Line 20:
|gene_symbol=GYPB
|gene_symbol=GYPB
|gene_synonyms=CD235b GPB PAS-3 SS
|gene_synonyms=CD235b GPB PAS-3 SS
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:4703
|hgnc_mgi_id=HGNC:4703
|nearest_ensembl=
|methods=TSS_database
|nearest_promoter_id=ENST00000508841.1
|nearest_ensembl=ENSG00000250361
|nearest_refseq=
|nearest_promoter_id=NM_001304382
|nearest_unigene=ENST00000507009
|nearest_refseq=NM_002100
|nearest_transcripts=ENST00000506679.5:4 X08055:4 ENST00000429670.3:6 ENST00000507009.5:6 BC069310:6 ENST00000642935.1:10 ENST00000513128.5:19 ENST00000505583.5:19 ENST00000506516.6:19 ENST00000513557.5:19 ENST00000513677.5:19 ENST00000511198.5:19 ENST00000504951.6:19 ENST00000510196.6:19 EU338223:19 EU338224:19 EU338225:19 EU338226:19 EU338227:19 EU338228:19 EU338229:19 EU338230:19 EU338235:19 EU338236:19 EU338237:19 EU338238:19 BC121077:22 BC121078:22 ENST00000502664.6:-37 NM_002100.6:-37 ENST00000503255.5:41 J02982:46 ENST00000638448.1:56 U05255:56 AY950609:56 AY950610:56 AY950611:56 AY950612:56 HQ448418:56 KJ891317:56 KJ896951:56 KR711936:56 AY509882:56 AY509883:56
|nearest_unigene=Hs.654368
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=EPD
|species=human
|species=human
|start=144019342
|start=144019343
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 19:07, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_62651.1
Species:human
Chr:chr4
Start:144019343
End:144019343
Strand:-
Source datasetsEPD
ProtocolTSS_database
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000508618.5:-2
ENST00000508841.1:-2
GeneID:2994
HGNC/MGI_ID:HGNC:4703
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000506679.5:4
  • X08055:4
  • ENST00000429670.3:6
  • ENST00000507009.5:6
  • BC069310:6
  • ENST00000642935.1:10
  • ENST00000513128.5:19
  • ENST00000505583.5:19
  • ENST00000506516.6:19
  • ENST00000513557.5:19
  • ENST00000513677.5:19
  • ENST00000511198.5:19
  • ENST00000504951.6:19
  • ENST00000510196.6:19
  • EU338223:19
  • EU338224:19
  • EU338225:19
  • EU338226:19
  • EU338227:19
  • EU338228:19
  • EU338229:19
  • EU338230:19
  • EU338235:19
  • EU338236:19
  • EU338237:19
  • EU338238:19
  • BC121077:22
  • BC121078:22
  • ENST00000502664.6:-37
  • NM_002100.6:-37
  • ENST00000503255.5:41
  • J02982:46
  • ENST00000638448.1:56
  • U05255:56
  • AY950609:56
  • AY950610:56
  • AY950611:56
  • AY950612:56
  • HQ448418:56
  • KJ891317:56
  • KJ896951:56
  • KR711936:56
  • AY509882:56
  • AY509883:56
view more...
Gene_name:glycophorin B (MNS blood group)
Gene_symbol:GYPB
Gene_synonyms:CD235b GPB PAS-3 SS
Gene_source:HGNC:4703



TATA-Box annotation

Distance to TSS:2
Nearest PromoterID:NM_001304382
Entrez ID:2994
Nearest Unigene:Hs.654368
Nearest Refseq:NM_002100
Nearest Ensembl:ENSG00000250361
Gene Name:glycophorin B (MNS blood group)
Gene Alias:CD235b|GPB|GYP|GYPA|MNS|PAS-3|SS
Gene Type:protein-coding
CpG%:0.000000
GC%:0.000000
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "ENST00000506679.5:4 X08055:4 ENST00000429670.3:6 ENST00000507009.5:6 BC069310:6 ENST00000642935.1:10 ENST00000513128.5:19 ENST00000505583.5:19 ENST00000506516.6:19 ENST00000513557.5:19 ENST00000513677.5:19 ENST00000511198.5:19 ENST00000504951.6:19 ENST00000510196.6:19 EU338223:19 EU338224:19 EU338225:19 EU338226:19 EU338227:19 EU338228:19 EU338229:19 EU338230:19 EU338235:19 EU338236:19 EU338237:19 EU338238:19 BC121077:22 BC121078:22 ENST00000502664.6:-37 NM_002100.6:-37 ENST00000503255.5:41 J02982:46 ENST00000638448.1:56 U05255:56 AY950609:56 AY950610:56 AY950611:56 AY950612:56 HQ448418:56 KJ891317:56 KJ896951:56 KR711936:56 AY509882:56 AY509883:56" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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