TSS: Rfhg 65222.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=Intergenic |ccre_category=dELS |ccre_description=dELS,CTCF-bound (EH38D3668044,EH38E2351529) |chr=chr4 |cpg_percent=0.000000 |detailed_annotation=Int...") |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|all_trans= | |||
|annotation=Intergenic | |annotation=Intergenic | ||
|ccre_category=dELS | |ccre_category=dELS | ||
| Line 7: | Line 8: | ||
|detailed_annotation=Intergenic | |detailed_annotation=Intergenic | ||
|distance= | |distance= | ||
|distance_to_tss=- | |distance_to_tss=-92659 | ||
|end=189566952 | |end=189566952 | ||
|entrez_id= | |entrez_id=101928971 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.272727 | |gc_percent=0.272727 | ||
|gene_alias= | |gene_alias=TCONS_l2_00021807 | ||
|gene_description= | |gene_description=long intergenic non-protein coding RNA 1262 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000250739 | ||
|nearest_refseq= | |nearest_promoter_id=NR_121679 | ||
|nearest_unigene= | |nearest_refseq=NR_121679 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.519164 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=189566942 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 19:57, 15 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D3668044,EH38E2351529) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -92659 |
|---|---|
| Nearest PromoterID: | NR_121679 |
| Entrez ID: | 101928971 |
| Nearest Unigene: | Hs.519164 |
| Nearest Refseq: | NR_121679 |
| Nearest Ensembl: | ENSG00000250739 |
| Gene Name: | |
| Gene Alias: | TCONS_l2_00021807 |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.272727 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |