TSS: Rfhg 6827.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=exon ( | |all_trans=BC007912:-9 | ||
|annotation=exon (NM_001330585, exon 13 of 25) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=exon (NM_001330585, exon 13 of 25) | ||
|distance=-9 | |distance=-9 | ||
|distance_to_tss= | |distance_to_tss=7806 | ||
|end=52358399 | |end=52358399 | ||
|entrez_id= | |entrez_id=200014 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.000000 | |gc_percent=0.000000 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=coiled-coil and C2 domain containing 1B | ||
|gene_id=200014 | |gene_id=200014 | ||
|gene_name=coiled-coil and C2 domain containing 1B | |gene_name=coiled-coil and C2 domain containing 1B | ||
| Line 19: | Line 20: | ||
|gene_symbol=CC2D1B | |gene_symbol=CC2D1B | ||
|gene_synonyms=Freud-2 KIAA1836 Lgd1 | |gene_synonyms=Freud-2 KIAA1836 Lgd1 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:29386 | |hgnc_mgi_id=HGNC:29386 | ||
|nearest_ensembl= | |methods=TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000154222 | ||
|nearest_refseq= | |nearest_promoter_id=NM_032449 | ||
|nearest_unigene= | |nearest_refseq=NM_032449 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.591451 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start= | |start=52358399 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 20:54, 15 March 2025
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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|
TATA-Box annotation
| Distance to TSS: | 7806 |
|---|---|
| Nearest PromoterID: | NM_032449 |
| Entrez ID: | 200014 |
| Nearest Unigene: | Hs.591451 |
| Nearest Refseq: | NM_032449 |
| Nearest Ensembl: | ENSG00000154222 |
| Gene Name: | coiled-coil and C2 domain containing 1B |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.