TSS: Rfhg 72363.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000602502.1:-18 AK092789:-18 BC045570:136 | ||
|annotation=promoter-TSS (NM_001040158) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3762715,EH38E2410870) | |ccre_description=PLS,CTCF-bound (EH38D3762715,EH38E2410870) | ||
|chr=chr5 | |chr=chr5 | ||
|cpg_percent=0.277778 | |cpg_percent=0.277778 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001040158) | ||
|distance=-18 | |distance=-18 | ||
|distance_to_tss= | |distance_to_tss=-69 | ||
|end=135399316 | |end=135399316 | ||
|entrez_id= | |entrez_id=9555 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.842105 | |gc_percent=0.842105 | ||
|gene_alias= | |gene_alias=H2A.y{{!}}H2A/y{{!}}H2AF12M{{!}}MACROH2A1.1{{!}}mH2A1{{!}}macroH2A1.2 | ||
|gene_description= | |gene_description=H2A histone family member Y | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
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|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000113648 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001040158 | ||
|nearest_unigene= | |nearest_refseq=NM_004893 | ||
|nearest_transcripts=BC045570:136 | |||
|nearest_unigene=Hs.420272 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=135399298 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 22:12, 15 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3762715,EH38E2410870) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -69 |
|---|---|
| Nearest PromoterID: | NM_001040158 |
| Entrez ID: | 9555 |
| Nearest Unigene: | Hs.420272 |
| Nearest Refseq: | NM_004893 |
| Nearest Ensembl: | ENSG00000113648 |
| Gene Name: | |
| Gene Alias: | H2A.y|H2A/y|H2AF12M|MACROH2A1.1|mH2A1|macroH2A1.2 |
| Gene Type: | protein-coding |
| CpG%: | 0.277778 |
| GC%: | 0.842105 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |