TSS: Rfhg 74136.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000009530.11) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D3776454,EH38E2420968) |chr=chr5 |cpg_percent=0.076923 |de...")
 
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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000009530.11)
|all_trans=NM_001025159.3:0 NM_004355.4:0 NM_001364084.3:0 NM_001025158.3:0 NM_001364083.3:0 NR_157074.3:0 ENST00000517791.1:-1 ENST00000523813.2:-58 ENST00000524315.6:-58 M28589:108 ENST00000377795.7:129 BC024272:129 BC018726:138 X00497:143 M28588:145 ENST00000009530.12:147 ENST00000523836.6:147 ENST00000518797.6:147 ENST00000522246.5:147 ENST00000522153.1:147 AK292076:147 AK300669:147 AK297889:147 AK308929:147 ENST00000353334.11:148 K01144:148 ENST00000523208.6:149 AB590276:149 BT019505:149 CU676294:149 DQ892005:149 DQ895194:149 KJ890872:149 ENST00000517752.5:152
|annotation=promoter-TSS (NM_001364084)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D3776454,EH38E2420968)
|ccre_description=PLS,CTCF-bound (EH38D3776454,EH38E2420968)
|chr=chr5
|chr=chr5
|cpg_percent=0.076923
|cpg_percent=0.076923
|detailed_annotation=protein_coding-promoter-TSS (ENST00000009530.11)
|detailed_annotation=promoter-TSS (NM_001364084)
|distance=0
|distance=0
|distance_to_tss=8
|distance_to_tss=32
|end=150412911
|end=150412911
|entrez_id=ENSG00000019582
|entrez_id=972
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.714286
|gc_percent=0.714286
|gene_alias=
|gene_alias=DHLAG{{!}}HLADG{{!}}II{{!}}Ia-GAMMA{{!}}p33
|gene_description=
|gene_description=CD74 molecule
|gene_id=
|gene_id=
|gene_name=
|gene_name=
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|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000517791.1
|nearest_ensembl=ENSG00000019582
|nearest_refseq=
|nearest_promoter_id=NM_001025158
|nearest_unigene=ENST00000522246
|nearest_refseq=NM_004355
|nearest_transcripts=ENST00000517791.1:-1 ENST00000523813.2:-58 ENST00000524315.6:-58 M28589:108 ENST00000377795.7:129 BC024272:129 BC018726:138 X00497:143 M28588:145 ENST00000009530.12:147 ENST00000523836.6:147 ENST00000518797.6:147 ENST00000522246.5:147 ENST00000522153.1:147 AK292076:147 AK300669:147 AK297889:147 AK308929:147 ENST00000353334.11:148 K01144:148 ENST00000523208.6:149 AB590276:149 BT019505:149 CU676294:149 DQ892005:149 DQ895194:149 KJ890872:149 ENST00000517752.5:152
|nearest_unigene=Hs.436568
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=ENCODE
|species=human
|species=human
|start=150412897
|start=150412898
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 22:45, 15 March 2025

Basic information about the TSS

TSS ID:rfhg_74136.1
Species:human
Chr:chr5
Start:150412898
End:150412911
Strand:-
Source datasetsENCODE
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3776454,EH38E2420968)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:NM_001025159.3:0
NM_004355.4:0
NM_001364084.3:0
NM_001025158.3:0
NM_001364083.3:0
NR_157074.3:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • ENST00000517791.1:-1
  • ENST00000523813.2:-58
  • ENST00000524315.6:-58
  • M28589:108
  • ENST00000377795.7:129
  • BC024272:129
  • BC018726:138
  • X00497:143
  • M28588:145
  • ENST00000009530.12:147
  • ENST00000523836.6:147
  • ENST00000518797.6:147
  • ENST00000522246.5:147
  • ENST00000522153.1:147
  • AK292076:147
  • AK300669:147
  • AK297889:147
  • AK308929:147
  • ENST00000353334.11:148
  • K01144:148
  • ENST00000523208.6:149
  • AB590276:149
  • BT019505:149
  • CU676294:149
  • DQ892005:149
  • DQ895194:149
  • KJ890872:149
  • ENST00000517752.5:152
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:32
Nearest PromoterID:NM_001025158
Entrez ID:972
Nearest Unigene:Hs.436568
Nearest Refseq:NM_004355
Nearest Ensembl:ENSG00000019582
Gene Name:
Gene Alias:DHLAG|HLADG|II|Ia-GAMMA|p33
Gene Type:protein-coding
CpG%:0.076923
GC%:0.714286
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "ENST00000517791.1:-1 ENST00000523813.2:-58 ENST00000524315.6:-58 M28589:108 ENST00000377795.7:129 BC024272:129 BC018726:138 X00497:143 M28588:145 ENST00000009530.12:147 ENST00000523836.6:147 ENST00000518797.6:147 ENST00000522246.5:147 ENST00000522153.1:147 AK292076:147 AK300669:147 AK297889:147 AK308929:147 ENST00000353334.11:148 K01144:148 ENST00000523208.6:149 AB590276:149 BT019505:149 CU676294:149 DQ892005:149 DQ895194:149 KJ890872:149 ENST00000517752.5:152" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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