TSS: Rfhg 79332.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
| | |all_trans=AB451259:-86 EU446960:-86 EU832089:-86 EU832181:-86 AB451385:-86 CU678090:-87 KJ891320:-87 AB590706:-87 BC052623:-108 BC002649:-122 ENST00000343677.4:-128 NM_005319.4:-128 AK290947:-128 D28457:-128 | ||
|annotation=exon (NM_005319, exon 1 of 1) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3826682,EH38E2455713) | |ccre_description=PLS,CTCF-bound (EH38D3826682,EH38E2455713) | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=exon (NM_005319, exon 1 of 1) | ||
|distance=-86 | |distance=-86 | ||
|distance_to_tss= | |distance_to_tss=131 | ||
|end=26056342 | |end=26056342 | ||
|entrez_id= | |entrez_id=3006 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.750000 | |gc_percent=0.750000 | ||
|gene_alias= | |gene_alias=H1.2{{!}}H1C{{!}}H1F2{{!}}H1s-1 | ||
|gene_description= | |gene_description=histone cluster 1 H1 family member c | ||
|gene_id=3006 | |gene_id=3006 | ||
|gene_name=H1.2 linker histone, cluster member | |gene_name=H1.2 linker histone, cluster member | ||
| Line 19: | Line 20: | ||
|gene_symbol=H1-2 | |gene_symbol=H1-2 | ||
|gene_synonyms=H1.2 H1c H1s-1 | |gene_synonyms=H1.2 H1c H1s-1 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:4716 | |hgnc_mgi_id=HGNC:4716 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000187837 | ||
|nearest_refseq= | |nearest_promoter_id=NM_005319 | ||
|nearest_unigene= | |nearest_refseq=NM_005319 | ||
|nearest_transcripts=CU678090:-87 KJ891320:-87 AB590706:-87 BC052623:-108 BC002649:-122 ENST00000343677.4:-128 NM_005319.4:-128 AK290947:-128 D28457:-128 | |||
|nearest_unigene=Hs.7644 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA548673 | |||
|species=human | |species=human | ||
|start= | |start=26056339 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 00:21, 16 March 2025
Basic information about the TSS
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| Source datasets | PRJNA548673 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3826682,EH38E2455713) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 131 |
|---|---|
| Nearest PromoterID: | NM_005319 |
| Entrez ID: | 3006 |
| Nearest Unigene: | Hs.7644 |
| Nearest Refseq: | NM_005319 |
| Nearest Ensembl: | ENSG00000187837 |
| Gene Name: | H1.2 linker histone, cluster member |
| Gene Alias: | H1.2|H1C|H1F2|H1s-1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.750000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.