TSS: Rfhg 79409.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000341023.1)
|all_trans=ENST00000635641.1:226 ENST00000650491.1:226 ENST00000635200.1:226 ENST00000341023.2:226 NM_003530.4:226 NM_021065.3:226 AK316611:226 AK312127:226 BC093809:234 BC093807:237 BC128035:276 CR541970:276 EU446963:276 CR541999:276 BC031333:307
|annotation=promoter-TSS (NM_021065)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D3826853,EH38E2455856)
|ccre_description=PLS,CTCF-bound (EH38D3826853,EH38E2455856)
|chr=chr6
|chr=chr6
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000341023.1)
|detailed_annotation=promoter-TSS (NM_021065)
|distance=226
|distance=226
|distance_to_tss=1
|distance_to_tss=-38
|end=26199524
|end=26199524
|entrez_id=ENSG00000277224
|entrez_id=8343
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.333333
|gc_percent=0.333333
|gene_alias=
|gene_alias=H2B/g{{!}}H2BFG
|gene_description=
|gene_description=histone cluster 1 H2B family member f
|gene_id=3013 8351
|gene_id=3013 8351
|gene_name=H2A clustered histone 7; H3 clustered histone 4
|gene_name=H2A clustered histone 7; H3 clustered histone 4
Line 19: Line 20:
|gene_symbol=H2AC7 H3C4
|gene_symbol=H2AC7 H3C4
|gene_synonyms=H2A.3 H2A/g H3/b
|gene_synonyms=H2A.3 H2A/g H3/b
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:4729 HGNC:4767
|hgnc_mgi_id=HGNC:4729 HGNC:4767
|nearest_ensembl=
|methods=NETCAGE
|nearest_promoter_id=ENST00000356530.5
|nearest_ensembl=ENSG00000277224
|nearest_refseq=
|nearest_promoter_id=NM_003522
|nearest_unigene=ENST00000356530
|nearest_refseq=NM_003522
|nearest_transcripts=BC093809:234 BC093807:237 BC128035:276 CR541970:276 EU446963:276 CR541999:276 BC031333:307
|nearest_unigene=Hs.182137
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=PRJNA4843412
|species=human
|species=human
|start=26199518
|start=26199519
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 00:22, 16 March 2025

Basic information about the TSS

TSS ID:rfhg_79409.1
Species:human
Chr:chr6
Start:26199519
End:26199524
Strand:-
Source datasetsPRJNA4843412
ProtocolNETCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D3826853,EH38E2455856)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000341023.2:226
AK316611:226
AK312127:226
GeneID:3013 8351
HGNC/MGI_ID:HGNC:4729 HGNC:4767
UniProt_ID:B2R5B6 P20671
Nearer transcript ids and distances:
  • BC093809:234
  • BC093807:237
  • BC128035:276
  • CR541970:276
  • EU446963:276
  • CR541999:276
  • BC031333:307
view more...
Gene_name:H2A clustered histone 7; H3 clustered histone 4
Gene_symbol:H2AC7 H3C4
Gene_synonyms:H2A.3 H2A/g H3/b
Gene_source:HGNC:4729 HGNC:4767



TATA-Box annotation

Distance to TSS:-38
Nearest PromoterID:NM_003522
Entrez ID:8343
Nearest Unigene:Hs.182137
Nearest Refseq:NM_003522
Nearest Ensembl:ENSG00000277224
Gene Name:H2A clustered histone 7; H3 clustered histone 4
Gene Alias:H2B/g|H2BFG
Gene Type:protein-coding
CpG%:0.000000
GC%:0.333333
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.
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