TSS: Rfhg 80499.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000463574.1)
|all_trans=MA869743:0 LY592155:0 MA869744:0 LY592156:0 MA869745:0 LY592157:0 MA869746:0 LY592158:0 MA869747:0 LY592159:0 MA869748:0 LY592160:0 MA869749:0 LY592161:0 MA869750:-4 LY592162:-4 MA869751:-5 LY592163:-5 MA869752:-6 LY592164:-6 MA869753:-15 LY592165:-15 KU204955:-17 MA869735:76 LY592147:76 MA869731:99 LY592143:99 MA869730:112 LY592142:112 MA869729:115 LY592141:115 MA869728:116 LY592140:116 MA869727:127 LY592139:127 MA869726:132 LY592138:132 MA869721:169 LY592133:169 MA869720:179 LY592132:179 MA869719:186 LY592131:186 MA869718:187 LY592130:187 MA869717:188 LY592129:188 MA869716:194 LY592128:194 MA869715:195 LY592127:195 MA869714:196 LY592126:196 MA869796:-313 LY592208:-313 DQ579752:-315 MA869797:-324 LY592209:-324 MA869798:-350 LY592210:-350 MA869799:-356 LY592211:-356 U18661:-389 MA869810:-417 LY592222:-417 M27540:-419 ENST00000474381.1:-480 MA869814:-484 LY592226:-484
|annotation=exon (NM_005514, exon 3 of 8).6
|ccre_category=pELS
|ccre_category=pELS
|ccre_description=pELS (EH38D3831129,EH38E2459084)
|ccre_description=pELS (EH38D3831129,EH38E2459084)
|chr=chr6
|chr=chr6
|cpg_percent=0.150943
|cpg_percent=0.150943
|detailed_annotation=protein_coding-promoter-TSS (ENST00000463574.1)
|detailed_annotation=exon (NM_005514, exon 3 of 8).6
|distance=0
|distance=0
|distance_to_tss=-249
|distance_to_tss=781
|end=31356425
|end=31356425
|entrez_id=ENSG00000271581
|entrez_id=3106
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.740741
|gc_percent=0.740741
|gene_alias=
|gene_alias=AS{{!}}B-4901{{!}}HLAB
|gene_description=
|gene_description=major histocompatibility complex, class I, B
|gene_id=
|gene_id=
|gene_name=
|gene_name=
Line 19: Line 20:
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=unprocessed_pseudogene
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000603274.1
|nearest_ensembl=ENSG00000234745
|nearest_refseq=
|nearest_promoter_id=NM_005514
|nearest_unigene=ENST00000603274
|nearest_refseq=NM_005514
|nearest_transcripts=MA869750:-4 LY592162:-4 MA869751:-5 LY592163:-5 MA869752:-6 LY592164:-6 MA869753:-15 LY592165:-15 KU204955:-17 MA869735:76 LY592147:76 MA869731:99 LY592143:99 MA869730:112 LY592142:112 MA869729:115 LY592141:115 MA869728:116 LY592140:116 MA869727:127 LY592139:127 MA869726:132 LY592138:132 MA869721:169 LY592133:169 MA869720:179 LY592132:179 MA869719:186 LY592131:186 MA869718:187 LY592130:187 MA869717:188 LY592129:188 MA869716:194 LY592128:194 MA869715:195 LY592127:195 MA869714:196 LY592126:196 MA869796:-313 LY592208:-313 DQ579752:-315 MA869797:-324 LY592209:-324 MA869798:-350 LY592210:-350 MA869799:-356 LY592211:-356 U18661:-389 MA869810:-417 LY592222:-417 M27540:-419 ENST00000474381.1:-480 MA869814:-484 LY592226:-484
|nearest_unigene=Hs.77961
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=31356371
|start=31356372
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 00:42, 16 March 2025

Basic information about the TSS

TSS ID:rfhg_80499.1
Species:human
Chr:chr6
Start:31356372
End:31356425
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS (EH38D3831129,EH38E2459084)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:MA869743:0
LY592155:0
MA869744:0
LY592156:0
MA869745:0
LY592157:0
MA869746:0
LY592158:0
MA869747:0
LY592159:0
MA869748:0
LY592160:0
MA869749:0
LY592161:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • MA869750:-4
  • LY592162:-4
  • MA869751:-5
  • LY592163:-5
  • MA869752:-6
  • LY592164:-6
  • MA869753:-15
  • LY592165:-15
  • KU204955:-17
  • MA869735:76
  • LY592147:76
  • MA869731:99
  • LY592143:99
  • MA869730:112
  • LY592142:112
  • MA869729:115
  • LY592141:115
  • MA869728:116
  • LY592140:116
  • MA869727:127
  • LY592139:127
  • MA869726:132
  • LY592138:132
  • MA869721:169
  • LY592133:169
  • MA869720:179
  • LY592132:179
  • MA869719:186
  • LY592131:186
  • MA869718:187
  • LY592130:187
  • MA869717:188
  • LY592129:188
  • MA869716:194
  • LY592128:194
  • MA869715:195
  • LY592127:195
  • MA869714:196
  • LY592126:196
  • MA869796:-313
  • LY592208:-313
  • DQ579752:-315
  • MA869797:-324
  • LY592209:-324
  • MA869798:-350
  • LY592210:-350
  • MA869799:-356
  • LY592211:-356
  • U18661:-389
  • MA869810:-417
  • LY592222:-417
  • M27540:-419
  • ENST00000474381.1:-480
  • MA869814:-484
  • LY592226:-484
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:781
Nearest PromoterID:NM_005514
Entrez ID:3106
Nearest Unigene:Hs.77961
Nearest Refseq:NM_005514
Nearest Ensembl:ENSG00000234745
Gene Name:
Gene Alias:AS|B-4901|HLAB
Gene Type:protein-coding
CpG%:0.150943
GC%:0.740741
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "MA869750:-4 LY592162:-4 MA869751:-5 LY592163:-5 MA869752:-6 LY592164:-6 MA869753:-15 LY592165:-15 KU204955:-17 MA869735:76 LY592147:76 MA869731:99 LY592143:99 MA869730:112 LY592142:112 MA869729:115 LY592141:115 MA869728:116 LY592140:116 MA869727:127 LY592139:127 MA869726:132 LY592138:132 MA869721:169 LY592133:169 MA869720:179 LY592132:179 MA869719:186 LY592131:186 MA869718:187 LY592130:187 MA869717:188 LY592129:188 MA869716:194 LY592128:194 MA869715:195 LY592127:195 MA869714:196 LY592126:196 MA869796:-313 LY592208:-313 DQ579752:-315 MA869797:-324 LY592209:-324 MA869798:-350 LY592210:-350 MA869799:-356 LY592211:-356 U18661:-389 MA869810:-417 LY592222:-417 M27540:-419 ENST00000474381.1:-480 MA869814:-484 LY592226:-484" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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