TSS: Rfhg 81181.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000360004.5)
|all_trans=DQ284432:0 AF291675:0 AJ297586:0 AY961068:0 AY961075:0 HG974573:0 HG974575:0 HG974603:0 HM067845:0 HM067846:0 M30179:0 L02545:0 CU678949:0 EU375850:0 M11161:0 X99895:0 U84892:0 DQ284435:0 AJ697892:0 AJ697893:0 AJ297582:0 AJ297585:0 AJ297587:0 AJ302075:0 AY626551:0 AY770514:0 AY961062:0 AY961063:0 AY961064:0 AY961065:0 AY961066:0 AY961067:0 AY961069:0 AY961070:0 AY961071:0 AY961072:0 AY961073:0 AY961074:0 AY961076:0 AY961077:0 AY961078:0 DQ002917:0 DQ090958:0 GQ891551:0 HG974571:0 HG974572:0 HG974574:0 HG974576:0 HG974577:0 HG974578:0 HG974579:0 HG974580:0 HG974582:0 HG974583:0 HG974584:0 HG974585:0 HG974586:0 HG974587:0 HG974588:0 HG974589:0 HG974590:0 HG974591:0 HG974592:0 HG974595:0 HG974596:0 HG974597:0 HG974598:0 HG974599:0 HG974600:0 HG974601:0 HG974602:0 HG974604:0 HG974605:0 HM067843:0 HM067844:0 HM067847:0 HM067848:0 HM067849:0 HM067850:0 HM067852:0 HM067853:0 HM067854:0 HM067855:0 HM067856:0 HM067857:0 HM067858:0 HM067859:0 HM067860:0 HM067861:0 HM067862:0 HM067863:0 HM627215:0 LK391771:0 LK391772:0 LK391773:0 LK391774:0 LK391775:0 LK391776:0 LK391777:0 LK391778:0 LK391779:0 LK391780:0 LK391781:0 LK391782:0 LK391783:0 LK391784:0 LM611904:0 LM611905:0 LN623522:0 LN830949:0 LN854575:0 LN854576:0 MH049486:0 U95989:0 MK651797:0 HQ447401:0 KJ891349:0 KJ901488:0 KJ901489:0 HQ447185:0 KJ901490:0 KJ905776:0 KJ905777:0 KJ534866:0 AB528619:0 AJ297583:0 AJ297584:0 AY935719:0 CU689080:0 BC171883:-5 M11867:-8 M20504:-14 M27635:-16 M28583:-18 AF490771:18 AK226058:-19 L76133:-19 U65585:-19 BC033827:-22 M20430:-22 AB062112:-23 M26038:-24 BC007920:-25 M28584:28 M30180:28 M33600:-30 BC108922:-34 X12544:-37 AK291499:-41 X03069:-41 AK225690:-42 AK290388:-42 AK225683:-42 BC031023:-42 BC008403:-42 AK289463:-42 X99896:44 D86415:65 U17381:72 U17379:72 AK291987:-73 LP895650:-73 U17380:74 AK293020:-83 ENST00000360004.5:-85 NM_002124.4:-85 LP896422:-85 M16957:86 M16959:86 M17378:86 AF010142:86 M16958:86
|annotation=promoter-TSS (NM_002124)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS (EH38D3832375,EH38E2460039)
|ccre_description=PLS (EH38D3832375,EH38E2460039)
|chr=chr6
|chr=chr6
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000360004.5)
|detailed_annotation=promoter-TSS (NM_002124)
|distance=0
|distance=0
|distance_to_tss=96
|distance_to_tss=84
|end=32589763
|end=32589763
|entrez_id=ENSG00000196126
|entrez_id=3123
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.565217
|gc_percent=0.565217
|gene_alias=
|gene_alias=DRB1{{!}}HLA-DR1B{{!}}HLA-DRB{{!}}SS1
|gene_description=
|gene_description=major histocompatibility complex, class II, DR beta 1
|gene_id=3123 3125 3126 3127
|gene_id=3123 3125 3126 3127
|gene_name=major histocompatibility complex, class II, DR beta 1; major histocompatibility complex, class II, DR beta 3; major histocompatibility complex, class II, DR beta 4; major histocompatibility complex, class II, DR beta 5
|gene_name=major histocompatibility complex, class II, DR beta 1; major histocompatibility complex, class II, DR beta 3; major histocompatibility complex, class II, DR beta 4; major histocompatibility complex, class II, DR beta 5
Line 19: Line 20:
|gene_symbol=HLA-DRB1 HLA-DRB3 HLA-DRB4 HLA-DRB5
|gene_symbol=HLA-DRB1 HLA-DRB3 HLA-DRB4 HLA-DRB5
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:4948 HGNC:4951 HGNC:4952 HGNC:4953
|hgnc_mgi_id=HGNC:4948 HGNC:4951 HGNC:4952 HGNC:4953
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000360004.5
|nearest_ensembl=ENSG00000196126
|nearest_refseq=
|nearest_promoter_id=NM_001243965
|nearest_unigene=ENST00000360004
|nearest_refseq=NM_002124
|nearest_transcripts=BC171883:-5 M11867:-8 M20504:-14 M27635:-16 M28583:-18 AF490771:18 AK226058:-19 L76133:-19 U65585:-19 BC033827:-22 M20430:-22 AB062112:-23 M26038:-24 BC007920:-25 M28584:28 M30180:28 M33600:-30 BC108922:-34 X12544:-37 AK291499:-41 X03069:-41 AK225690:-42 AK290388:-42 AK225683:-42 BC031023:-42 BC008403:-42 AK289463:-42 X99896:44 D86415:65 U17381:72 U17379:72 AK291987:-73 LP895650:-73 U17380:74 AK293020:-83 ENST00000360004.5:-85 NM_002124.4:-85 LP896422:-85 M16957:86 M16959:86 M17378:86 AF010142:86 M16958:86
|nearest_unigene=Hs.534322
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=32589740
|start=32589741
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 00:56, 16 March 2025

Basic information about the TSS

TSS ID:rfhg_81181.1
Species:human
Chr:chr6
Start:32589741
End:32589763
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS (EH38D3832375,EH38E2460039)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:DQ284432:0
AF291675:0
AJ297586:0
AY961068:0
AY961075:0
HG974573:0
HG974575:0
HG974603:0
HM067845:0
HM067846:0
M30179:0
L02545:0
CU678949:0
EU375850:0
M11161:0
X99895:0
U84892:0
DQ284435:0
AJ697892:0
AJ697893:0
AJ297582:0
AJ297585:0
AJ297587:0
AJ302075:0
AY626551:0
AY770514:0
AY961062:0
AY961063:0
AY961064:0
AY961065:0
AY961066:0
AY961067:0
AY961069:0
AY961070:0
AY961071:0
AY961072:0
AY961073:0
AY961074:0
AY961076:0
AY961077:0
AY961078:0
DQ002917:0
DQ090958:0
GQ891551:0
HG974571:0
HG974572:0
HG974574:0
HG974576:0
HG974577:0
HG974578:0
HG974579:0
HG974580:0
HG974582:0
HG974583:0
HG974584:0
HG974585:0
HG974586:0
HG974587:0
HG974588:0
HG974589:0
HG974590:0
HG974591:0
HG974592:0
HG974595:0
HG974596:0
HG974597:0
HG974598:0
HG974599:0
HG974600:0
HG974601:0
HG974602:0
HG974604:0
HG974605:0
HM067843:0
HM067844:0
HM067847:0
HM067848:0
HM067849:0
HM067850:0
HM067852:0
HM067853:0
HM067854:0
HM067855:0
HM067856:0
HM067857:0
HM067858:0
HM067859:0
HM067860:0
HM067861:0
HM067862:0
HM067863:0
LK391771:0
LK391772:0
LK391773:0
LK391774:0
LK391775:0
LK391776:0
LK391777:0
LK391778:0
LK391779:0
LK391780:0
LK391781:0
LK391782:0
LK391783:0
LK391784:0
LM611904:0
LM611905:0
LN623522:0
LN830949:0
LN854575:0
LN854576:0
HQ447401:0
HQ447185:0
KJ534866:0
AB528619:0
AJ297583:0
AJ297584:0
AY935719:0
CU689080:0
GeneID:3123 3125 3126 3127
HGNC/MGI_ID:HGNC:4948 HGNC:4951 HGNC:4952 HGNC:4953
UniProt_ID:A0A0A1I7P0 A0A0A1I7P2 A0A0A1I8N5 A0A0A1IBB2 A0A0A1IBB5 A0A0A8LC21 A0A0A8LC38 A0A0A8LC52 A0A0A8LDV8 A0A0A8LDW1 A0A0A8LDW7 A0A0A8LDY6 A0A0A8LDZ3 A0A0A8LE01 A0A0A8LE16 A0A0A8LE23 A0A0A8LE32 A0A0G4PYK8 A0A0G4PYZ0 A0A5K1TT61 A0A5K1TT63 A0A5K1TTE0 A0A5K1TTE4 A0A5K1TTE6 A0A5K1TTE7 A0A5K1TTI9 A0A5K1TTN8 P79552 Q2LIR3 Q30179 Q4ZJJ2 Q56FN4 Q56FN5 Q5XKU0 Q95462 Q95IH1 X5DNQ0
Nearer transcript ids and distances:
  • BC171883:-5
  • M11867:-8
  • M20504:-14
  • M27635:-16
  • M28583:-18
  • AF490771:18
  • AK226058:-19
  • L76133:-19
  • U65585:-19
  • BC033827:-22
  • M20430:-22
  • AB062112:-23
  • M26038:-24
  • BC007920:-25
  • M28584:28
  • M30180:28
  • M33600:-30
  • BC108922:-34
  • X12544:-37
  • AK291499:-41
  • X03069:-41
  • AK225690:-42
  • AK290388:-42
  • AK225683:-42
  • BC031023:-42
  • BC008403:-42
  • AK289463:-42
  • X99896:44
  • D86415:65
  • U17381:72
  • U17379:72
  • AK291987:-73
  • LP895650:-73
  • U17380:74
  • AK293020:-83
  • ENST00000360004.5:-85
  • NM_002124.4:-85
  • LP896422:-85
  • M16957:86
  • M16959:86
  • M17378:86
  • AF010142:86
  • M16958:86
view more...
Gene_name:major histocompatibility complex, class II, DR beta 1; major histocompatibility complex, class II, DR beta 3; major histocompatibility complex, class II, DR beta 4; major histocompatibility complex, class II, DR beta 5
Gene_symbol:HLA-DRB1 HLA-DRB3 HLA-DRB4 HLA-DRB5
Gene_synonyms:
Gene_source:HGNC:4948 HGNC:4951 HGNC:4952 HGNC:4953



TATA-Box annotation

Distance to TSS:84
Nearest PromoterID:NM_001243965
Entrez ID:3123
Nearest Unigene:Hs.534322
Nearest Refseq:NM_002124
Nearest Ensembl:ENSG00000196126
Gene Name:major histocompatibility complex, class II, DR beta 1; major histocompatibility complex, class II, DR beta 3; major histocompatibility complex, class II, DR beta 4; major histocompatibility complex, class II, DR beta 5
Gene Alias:DRB1|HLA-DR1B|HLA-DRB|SS1
Gene Type:protein-coding
CpG%:0.000000
GC%:0.565217
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "BC171883:-5 M11867:-8 M20504:-14 M27635:-16 M28583:-18 AF490771:18 AK226058:-19 L76133:-19 U65585:-19 BC033827:-22 M20430:-22 AB062112:-23 M26038:-24 BC007920:-25 M28584:28 M30180:28 M33600:-30 BC108922:-34 X12544:-37 AK291499:-41 X03069:-41 AK225690:-42 AK290388:-42 AK225683:-42 BC031023:-42 BC008403:-42 AK289463:-42 X99896:44 D86415:65 U17381:72 U17379:72 AK291987:-73 LP895650:-73 U17380:74 AK293020:-83 ENST00000360004.5:-85 NM_002124.4:-85 LP896422:-85 M16957:86 M16959:86 M17378:86 AF010142:86 M16958:86" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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