TSS: Rfhg 8140.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000354431.8) |ccre_category=PLS |ccre_description=PLS,CTCF-bound (EH38D2183506,EH38E1359223) |chr=chr1 |cpg_percent=0.100000 |det...")
 
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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000354431.8)
|all_trans=ENST00000472069.1:30 KU178439:-32 KU178440:-32 KU178441:-32 KJ897908:-32 KJ898821:-32 ENST00000534056.5:-44 AK299468:-44 BX640903:-46 ENST00000370893.1:-47 AB208941:-48 ENST00000648585.1:-55 BC032308:-55 ENST00000533006.1:-58 ENST00000534632.5:-62 AK223254:-66 ENST00000370895.5:-67 ENST00000529485.5:-67 AK304490:-67 BC032865:-67 ENST00000370899.7:-69 ENST00000482102.2:-69 ENST00000370898.9:-69 NM_001199329.3:-69 NM_001199328.3:-69 NM_003838.5:-69 NM_001199327.2:-69 NM_001112808.3:-69 AF017445:-69 ENST00000370894.9:-70 ENST00000524915.5:-71 AK294948:-71 ENST00000467578.7:-73 BC020720:-73 ENST00000557284.7:-76
|annotation=promoter-TSS (NM_001322315)
|ccre_category=PLS
|ccre_category=PLS
|ccre_description=PLS,CTCF-bound (EH38D2183506,EH38E1359223)
|ccre_description=PLS,CTCF-bound (EH38D2183506,EH38E1359223)
|chr=chr1
|chr=chr1
|cpg_percent=0.100000
|cpg_percent=0.100000
|detailed_annotation=protein_coding-promoter-TSS (ENST00000354431.8)
|detailed_annotation=promoter-TSS (NM_001322315)
|distance=30
|distance=30
|distance_to_tss=-35
|distance_to_tss=104
|end=74198321
|end=74198321
|entrez_id=ENSG00000254685
|entrez_id=100526835
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.636364
|gc_percent=0.636364
|gene_alias=
|gene_alias=CARK{{!}}TNNI3K
|gene_description=
|gene_description=FPGT-TNNI3K readthrough
|gene_id=8790
|gene_id=8790
|gene_name=fucose-1-phosphate guanylyltransferase
|gene_name=fucose-1-phosphate guanylyltransferase
Line 19: Line 20:
|gene_symbol=FPGT
|gene_symbol=FPGT
|gene_synonyms=GFPP
|gene_synonyms=GFPP
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=HGNC:3825
|hgnc_mgi_id=HGNC:3825
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000472069.1
|nearest_ensembl=ENSG00000259030
|nearest_refseq=
|nearest_promoter_id=NM_001199327
|nearest_unigene=ENST00000534056
|nearest_refseq=NM_001112808
|nearest_transcripts=KU178439:-32 KU178440:-32 KU178441:-32 KJ897908:-32 KJ898821:-32 ENST00000534056.5:-44 AK299468:-44 BX640903:-46 ENST00000370893.1:-47 AB208941:-48 ENST00000648585.1:-55 BC032308:-55 ENST00000533006.1:-58 ENST00000534632.5:-62 AK223254:-66 ENST00000370895.5:-67 ENST00000529485.5:-67 AK304490:-67 BC032865:-67 ENST00000370899.7:-69 ENST00000482102.2:-69 ENST00000370898.9:-69 NM_001199329.3:-69 NM_001199328.3:-69 NM_003838.5:-69 NM_001199327.2:-69 NM_001112808.3:-69 AF017445:-69 ENST00000370894.9:-70 ENST00000524915.5:-71 AK294948:-71 ENST00000467578.7:-73 BC020720:-73 ENST00000557284.7:-76
|nearest_unigene=Hs.480085
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=74198310
|start=74198311
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 01:01, 16 March 2025

Basic information about the TSS

TSS ID:rfhg_8140.1
Species:human
Chr:chr1
Start:74198311
End:74198321
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:PLS,CTCF-bound (EH38D2183506,EH38E1359223)
Category:PLS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:ENST00000472069.1:30
GeneID:8790
HGNC/MGI_ID:HGNC:3825
UniProt_ID:H0YDF0
Nearer transcript ids and distances:
  • KU178439:-32
  • KU178440:-32
  • KU178441:-32
  • KJ897908:-32
  • KJ898821:-32
  • ENST00000534056.5:-44
  • AK299468:-44
  • BX640903:-46
  • ENST00000370893.1:-47
  • AB208941:-48
  • ENST00000648585.1:-55
  • BC032308:-55
  • ENST00000533006.1:-58
  • ENST00000534632.5:-62
  • AK223254:-66
  • ENST00000370895.5:-67
  • ENST00000529485.5:-67
  • AK304490:-67
  • BC032865:-67
  • ENST00000370899.7:-69
  • ENST00000482102.2:-69
  • ENST00000370898.9:-69
  • NM_001199329.3:-69
  • NM_001199328.3:-69
  • NM_003838.5:-69
  • NM_001199327.2:-69
  • NM_001112808.3:-69
  • AF017445:-69
  • ENST00000370894.9:-70
  • ENST00000524915.5:-71
  • AK294948:-71
  • ENST00000467578.7:-73
  • BC020720:-73
  • ENST00000557284.7:-76
view more...
Gene_name:fucose-1-phosphate guanylyltransferase
Gene_symbol:FPGT
Gene_synonyms:GFPP
Gene_source:HGNC:3825



TATA-Box annotation

Distance to TSS:104
Nearest PromoterID:NM_001199327
Entrez ID:100526835
Nearest Unigene:Hs.480085
Nearest Refseq:NM_001112808
Nearest Ensembl:ENSG00000259030
Gene Name:fucose-1-phosphate guanylyltransferase
Gene Alias:CARK|TNNI3K
Gene Type:protein-coding
CpG%:0.100000
GC%:0.636364
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):



TSS expression

Expression data not found.


















Property "Nearest transcripts" (as page type) with input value "KU178439:-32 KU178440:-32 KU178441:-32 KJ897908:-32 KJ898821:-32 ENST00000534056.5:-44 AK299468:-44 BX640903:-46 ENST00000370893.1:-47 AB208941:-48 ENST00000648585.1:-55 BC032308:-55 ENST00000533006.1:-58 ENST00000534632.5:-62 AK223254:-66 ENST00000370895.5:-67 ENST00000529485.5:-67 AK304490:-67 BC032865:-67 ENST00000370899.7:-69 ENST00000482102.2:-69 ENST00000370898.9:-69 NM_001199329.3:-69 NM_001199328.3:-69 NM_003838.5:-69 NM_001199327.2:-69 NM_001112808.3:-69 AF017445:-69 ENST00000370894.9:-70 ENST00000524915.5:-71 AK294948:-71 ENST00000467578.7:-73 BC020720:-73 ENST00000557284.7:-76" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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