TSS: Rfhg 81636.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |all_trans=LF340897:-91 MA576474:-91 EF139858:-203 AF086234:-217 ENST00000374231.8:-228 KJ894970:-230 ENST00000607484.6:-244 NM_032340.4:-244 AK311835:-244 LF210759:-269 MA446336:-269 ENST00000374214.3:-271 AY568085:-271 BC006007:-271 | ||
|annotation=intron (NM_032340, intron 1 of 3) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D3833531,EH38E2460909) | |ccre_description=pELS,CTCF-bound (EH38D3833531,EH38E2460909) | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.125000 | |cpg_percent=0.125000 | ||
|detailed_annotation= | |detailed_annotation=CpG | ||
|distance=-91 | |distance=-91 | ||
|distance_to_tss= | |distance_to_tss=252 | ||
|end=33711456 | |end=33711456 | ||
|entrez_id= | |entrez_id=84300 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.705882 | |gc_percent=0.705882 | ||
|gene_alias= | |gene_alias=C6orf125{{!}}C6orf126{{!}}Cbp6{{!}}M19{{!}}MC3DN7{{!}}MNF1{{!}}bA6B20.2 | ||
|gene_description= | |gene_description=ubiquinol-cytochrome c reductase complex assembly factor 2 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000137288 | ||
|nearest_refseq= | |nearest_promoter_id=NM_032340 | ||
|nearest_unigene= | |nearest_refseq=NM_032340 | ||
|nearest_transcripts=EF139858:-203 AF086234:-217 ENST00000374231.8:-228 KJ894970:-230 ENST00000607484.6:-244 NM_032340.4:-244 AK311835:-244 LF210759:-269 MA446336:-269 ENST00000374214.3:-271 AY568085:-271 BC006007:-271 | |||
|nearest_unigene=Hs.732448 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=33711440 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 01:05, 16 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3833531,EH38E2460909) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 252 |
|---|---|
| Nearest PromoterID: | NM_032340 |
| Entrez ID: | 84300 |
| Nearest Unigene: | Hs.732448 |
| Nearest Refseq: | NM_032340 |
| Nearest Ensembl: | ENSG00000137288 |
| Gene Name: | |
| Gene Alias: | C6orf125|C6orf126|Cbp6|M19|MC3DN7|MNF1|bA6B20.2 |
| Gene Type: | protein-coding |
| CpG%: | 0.125000 |
| GC%: | 0.705882 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |