TSS: Rfhg 81813.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |annotation=intron (NM_015245, intron 10 of 23) | ||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D3834937,EH38E2462004) | |ccre_description=dELS,CTCF-bound (EH38D3834937,EH38E2462004) | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.045455 | |cpg_percent=0.045455 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_015245, intron 10 of 23) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=124267 | ||
|end=35017094 | |end=35017094 | ||
|entrez_id= | |entrez_id=6954 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.533333 | |gc_percent=0.533333 | ||
|gene_alias= | |gene_alias=D6S230E{{!}}FPPR | ||
|gene_description= | |gene_description=t-complex 11 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name=TCP11 | ||
|gene_source= | |gene_source= | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000124678 | ||
|nearest_refseq= | |nearest_promoter_id=NR_158874 | ||
|nearest_unigene= | |nearest_refseq=NM_018679 | ||
|nearest_unigene=Hs.435371 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=35017050 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 03:31, 9 December 2023
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D3834937,EH38E2462004) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 124267 |
|---|---|
| Nearest PromoterID: | NR_158874 |
| Entrez ID: | 6954 |
| Nearest Unigene: | Hs.435371 |
| Nearest Refseq: | NM_018679 |
| Nearest Ensembl: | ENSG00000124678 |
| Gene Name: | TCP11 |
| Gene Alias: | D6S230E|FPPR |
| Gene Description: | t-complex 11 |
| Gene Type: | protein-coding |
| CpG%: | 0.045455 |
| GC%: | 0.533333 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |