TSS: Rfhg 87646.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |all_trans=AJ606332:32 ENST00000655005.1:-101 | ||
|annotation=intron (NM_018945, intron 1 of 12) | |||
|ccre_category=dELS | |ccre_category=dELS | ||
|ccre_description=dELS,CTCF-bound (EH38D3904642,EH38E2506108) | |ccre_description=dELS,CTCF-bound (EH38D3904642,EH38E2506108) | ||
|chr=chr6 | |chr=chr6 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_018945, intron 1 of 12) | ||
|distance=32 | |distance=32 | ||
|distance_to_tss= | |distance_to_tss=29135 | ||
|end=135880841 | |end=135880841 | ||
|entrez_id= | |entrez_id=27115 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=bA472E5.1 | ||
|gene_description= | |gene_description=phosphodiesterase 7B | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000171408 | ||
|nearest_refseq= | |nearest_promoter_id=NM_018945 | ||
|nearest_unigene= | |nearest_refseq=NM_018945 | ||
|nearest_transcripts=ENST00000655005.1:-101 | |||
|nearest_unigene=Hs.744230 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=135880832 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 02:59, 16 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | dELS,CTCF-bound (EH38D3904642,EH38E2506108) |
|---|---|
| Category: | dELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 29135 |
|---|---|
| Nearest PromoterID: | NM_018945 |
| Entrez ID: | 27115 |
| Nearest Unigene: | Hs.744230 |
| Nearest Refseq: | NM_018945 |
| Nearest Ensembl: | ENSG00000171408 |
| Gene Name: | |
| Gene Alias: | bA472E5.1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |