TSS: Rfhg 93495.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=LF331208:17 MA566785:17 D87457:-62 ENST00000464262.6:-86 BC003051:-86 BC077074:-87 NM_130442.4:-103 NR_038120.2:-103 AK301151:-111 ENST00000487843.1:-119 LF331209:152 MA566786:152 LF331210:240 MA566787:240 LF331211:405 MA566788:405 ENST00000396045.7:-479 | ||
|annotation=promoter-TSS (NM_001039459) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS,CTCF-bound (EH38D3966889,EH38E2548889) | |ccre_description=pELS,CTCF-bound (EH38D3966889,EH38E2548889) | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001039459) | ||
|distance=17 | |distance=17 | ||
|distance_to_tss= | |distance_to_tss=240 | ||
|end=36986030 | |end=36986030 | ||
|entrez_id= | |entrez_id=9844 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.444444 | |gc_percent=0.444444 | ||
|gene_alias= | |gene_alias=CED-12{{!}}CED12{{!}}ELMO-1 | ||
|gene_description= | |gene_description=engulfment and cell motility 1 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=ReCappable-seq | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000155849 | ||
|nearest_refseq= | |nearest_promoter_id=NR_038120 | ||
|nearest_unigene= | |nearest_refseq=NM_014800 | ||
|nearest_transcripts=D87457:-62 ENST00000464262.6:-86 BC003051:-86 BC077074:-87 NM_130442.4:-103 NR_038120.2:-103 AK301151:-111 ENST00000487843.1:-119 LF331209:152 MA566786:152 LF331210:240 MA566787:240 LF331211:405 MA566788:405 ENST00000396045.7:-479 | |||
|nearest_unigene=Hs.434989 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA548673 | |||
|species=human | |species=human | ||
|start= | |start=36986022 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 04:48, 16 March 2025
Basic information about the TSS
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| Source datasets | PRJNA548673 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | ReCappable-seq | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS,CTCF-bound (EH38D3966889,EH38E2548889) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 240 |
|---|---|
| Nearest PromoterID: | NR_038120 |
| Entrez ID: | 9844 |
| Nearest Unigene: | Hs.434989 |
| Nearest Refseq: | NM_014800 |
| Nearest Ensembl: | ENSG00000155849 |
| Gene Name: | |
| Gene Alias: | CED-12|CED12|ELMO-1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.444444 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |