TSS: Rfhg 93657.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
| | |all_trans=ENST00000390346.2:-26 BC071739:-26 AK301059:39 Y00790:106 M13231:139 KJ901789:139 CU687152:139 M27336:142 S73842:424 S60175:424 | ||
|annotation=intron (NR_040085, intron 3 of 3) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D3968046,EH38E2549768) | |ccre_description=PLS,CTCF-bound (EH38D3968046,EH38E2549768) | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NR_040085, intron 3 of 3) | ||
|distance=-26 | |distance=-26 | ||
|distance_to_tss= | |distance_to_tss=17551 | ||
|end=38359136 | |end=38359136 | ||
|entrez_id= | |entrez_id=100506776 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.500000 | |gc_percent=0.500000 | ||
|gene_alias= | |gene_alias=TCRGV | ||
|gene_description= | |gene_description=T cell receptor gamma locus antisense RNA 1 | ||
|gene_id=6976 | |gene_id=6976 | ||
|gene_name=T cell receptor gamma variable 3 | |gene_name=T cell receptor gamma variable 3 | ||
| Line 19: | Line 20: | ||
|gene_symbol=TRGV3 | |gene_symbol=TRGV3 | ||
|gene_synonyms=V1S3 | |gene_synonyms=V1S3 | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:12288 | |hgnc_mgi_id=HGNC:12288 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000281103 | ||
|nearest_refseq= | |nearest_promoter_id=NR_040085 | ||
|nearest_unigene= | |nearest_refseq=NR_040085 | ||
|nearest_transcripts=AK301059:39 Y00790:106 M13231:139 KJ901789:139 CU687152:139 M27336:142 S73842:424 S60175:424 | |||
|nearest_unigene=Hs.173034 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=38359121 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 04:51, 16 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D3968046,EH38E2549768) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 17551 |
|---|---|
| Nearest PromoterID: | NR_040085 |
| Entrez ID: | 100506776 |
| Nearest Unigene: | Hs.173034 |
| Nearest Refseq: | NR_040085 |
| Nearest Ensembl: | ENSG00000281103 |
| Gene Name: | T cell receptor gamma variable 3 |
| Gene Alias: | TCRGV |
| Gene Type: | ncRNA |
| CpG%: | 0.000000 |
| GC%: | 0.500000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.