TSS: Hg 101562.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0.005 |distance_to_tss=19799 |entrez_id=100507346 |gc_percent=0.40796 |gene_alias=- |gene_description=uncharacterized LOC100507346 |gene_name=LOC10050...") |
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{{TSSDetail | {{TSSDetail | ||
|chr=chr9 | |||
|cpg_percent=0.005 | |cpg_percent=0.005 | ||
|distance=NA | |||
|distance_to_tss=19799 | |distance_to_tss=19799 | ||
|end=95483410 | |||
|end_of_center_position=95483408 | |||
|entrez_id=100507346 | |entrez_id=100507346 | ||
|gc_percent=0.40796 | |gc_percent=0.40796 | ||
| Line 12: | Line 16: | ||
|nearest_refseq=NR_038982 | |nearest_refseq=NR_038982 | ||
|nearest_unigene=Hs.661847 | |nearest_unigene=Hs.661847 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=95483405 | |||
|start_of_center_position=95483407 | |||
|strand=- | |||
|tata_box=88(GCTTATATAACA,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101562.1 | |tss_id=hg_101562.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:43, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 19799 |
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| Nearest PromoterID: | NR_038982 |
| Entrez ID: | 100507346 |
| Nearest Unigene: | Hs.661847 |
| Nearest Refseq: | NR_038982 |
| Nearest Ensembl: | |
| Gene Name: | LOC100507346 |
| Gene Alias: | - |
| Gene Description: | uncharacterized LOC100507346 |
| Gene Type: | ncRNA |
| CpG%: | 0.005 |
| GC%: | 0.40796 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | 88(GCTTATATAACA,+,0.00) |