TSS: Rfhg 9857.1: Difference between revisions
From referenceTSS
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation= | |all_trans=AB384482:31 BC148348:31 BC042963:62 ENST00000370185.9:74 NM_001166252.2:74 NM_014839.5:74 AK056665:-74 AY304518:-74 AK291369:74 AK297417:77 AF357013:101 AB007924:-122 ENST00000457765.6:-126 AF541281:-126 AK300361:130 | ||
|annotation=5' UTR (NM_001166252, exon 1 of 6) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2202626,EH38E1371088) | |ccre_description=PLS,CTCF-bound (EH38D2202626,EH38E1371088) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=5' UTR (NM_001166252, exon 1 of 6) | ||
|distance=31 | |distance=31 | ||
|distance_to_tss=126 | |distance_to_tss=126 | ||
|end=99264418 | |end=99264418 | ||
|entrez_id= | |entrez_id=9890 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.000000 | |gc_percent=0.000000 | ||
|gene_alias= | |gene_alias=LPPR4{{!}}LPR4{{!}}PHP1{{!}}PRG-1{{!}}PRG1 | ||
|gene_description= | |gene_description=phospholipid phosphatase related 4 | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=TSS_database | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000117600 | ||
|nearest_refseq= | |nearest_promoter_id=NM_014839 | ||
|nearest_unigene= | |nearest_refseq=NM_014839 | ||
|nearest_transcripts=BC042963:62 ENST00000370185.9:74 NM_001166252.2:74 NM_014839.5:74 AK056665:-74 AY304518:-74 AK291369:74 AK297417:77 AF357013:101 AB007924:-122 ENST00000457765.6:-126 AF541281:-126 AK300361:130 | |||
|nearest_unigene=Hs.13245 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=EPD | |||
|species=human | |species=human | ||
|start= | |start=99264418 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 06:22, 16 March 2025
Basic information about the TSS
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| Source datasets | EPD | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | TSS_database | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2202626,EH38E1371088) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 126 |
|---|---|
| Nearest PromoterID: | NM_014839 |
| Entrez ID: | 9890 |
| Nearest Unigene: | Hs.13245 |
| Nearest Refseq: | NM_014839 |
| Nearest Ensembl: | ENSG00000117600 |
| Gene Name: | |
| Gene Alias: | LPPR4|LPR4|PHP1|PRG-1|PRG1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.000000 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |