TSS: Hg 101564.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetail |cpg_percent=0 |distance_to_tss=10663 |entrez_id=5727 |gc_percent=0.353234 |gene_alias=BCNS|HPE7|NBCCS|PTC|PTC1|PTCH|PTCH11 |gene_description=patched 1 |gene_name=...") |
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{{TSSDetail | {{TSSDetail | ||
|HPE7= | |||
|NBCCS= | |||
|PTC= | |||
|PTC1= | |||
|PTCH= | |||
|PTCH11= | |||
|chr=chr9 | |||
|cpg_percent=0 | |cpg_percent=0 | ||
|distance=NA | |||
|distance_to_tss=10663 | |distance_to_tss=10663 | ||
|end=95496538 | |||
|end_of_center_position=95496536 | |||
|entrez_id=5727 | |entrez_id=5727 | ||
|gc_percent=0.353234 | |gc_percent=0.353234 | ||
|gene_alias=BCNS | |gene_alias=BCNS{{!}}NBCCS{{!}}PTC{{!}}PTC1{{!}}PTCH | ||
|gene_description=patched 1 | |gene_description=patched 1 | ||
|gene_name=PTCH1 | |gene_name=PTCH1 | ||
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|nearest_refseq=NM_000264 | |nearest_refseq=NM_000264 | ||
|nearest_unigene=Hs.494538 | |nearest_unigene=Hs.494538 | ||
|tata_box= | |num_trans=0 | ||
|species=human | |||
|start=95496533 | |||
|start_of_center_position=95496535 | |||
|strand=- | |||
|tata_box=-6(TTTTTAATAGGC,+,0.00) | |||
|transcript_name= | |||
|tss_classification=no | |||
|tss_id=hg_101564.1 | |tss_id=hg_101564.1 | ||
|tss_score=1 | |||
}} | }} | ||
Latest revision as of 16:43, 15 June 2021
Basic information about the TSS
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| TSS cluster detected* |
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* The number of TSS cluster called studies (maximum 16)
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 10663 |
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| Nearest PromoterID: | NM_001083607 |
| Entrez ID: | 5727 |
| Nearest Unigene: | Hs.494538 |
| Nearest Refseq: | NM_000264 |
| Nearest Ensembl: | ENSG00000185920 |
| Gene Name: | PTCH1 |
| Gene Alias: | BCNS|NBCCS|PTC|PTC1|PTCH |
| Gene Description: | patched 1 |
| Gene Type: | protein-coding |
| CpG%: | 0 |
| GC%: | 0.353234 |
| TATA-Box(TBP)/Promoter/Homer Distance From TSS(sequence,strand,conservation): | -6(TTTTTAATAGGC,+,0.00) |