TSS: Rfhg 10008.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000656060.1:0 ENST00000654574.1:0 ENST00000664684.1:0 ENST00000453011.5:0 ENST00000454721.6:0 ENST00000656047.1:0 ENST00000654544.1:0 ENST00000655226.1:0 ENST00000659528.1:0 ENST00000656671.1:0 ENST00000658370.1:0 ENST00000666646.1:0 BX538249:0 ENST00000663958.1:-1 ENST00000446527.5:4 NR_109849.1:-5 ENST00000451213.2:-7 ENST00000669687.1:36 ENST00000656224.1:124 | ||
|annotation=promoter-TSS (NR_109849) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D2204050,EH38E1372062) | |ccre_description=PLS,CTCF-bound (EH38D2204050,EH38E1372062) | ||
|chr=chr1 | |chr=chr1 | ||
|cpg_percent=0.078125 | |cpg_percent=0.078125 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NR_109849) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss= | |distance_to_tss=37 | ||
|end=101025915 | |end=101025915 | ||
|entrez_id= | |entrez_id=102606465 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.723077 | |gc_percent=0.723077 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=uncharacterized LOC102606465 | ||
|gene_id=102606465 | |gene_id=102606465 | ||
|gene_name=DPH5 divergent transcript | |gene_name=DPH5 divergent transcript | ||
| Line 19: | Line 20: | ||
|gene_symbol=DPH5-DT | |gene_symbol=DPH5-DT | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=ncRNA | ||
|hgnc_mgi_id=HGNC:53720 | |hgnc_mgi_id=HGNC:53720 | ||
|methods=STRIPE-seq{{!}}CAGE{{!}}RAMPAGE{{!}}NETCAGE{{!}}SLIC_CAGE{{!}}oligo_capping{{!}}ReCappable-seq{{!}}C1CAGE | |||
|nearest_ensembl= | |nearest_ensembl= | ||
|nearest_promoter_id= | |nearest_promoter_id=NR_109849 | ||
|nearest_refseq= | |nearest_refseq=NR_109849 | ||
|nearest_unigene= | |nearest_transcripts=ENST00000663958.1:-1 ENST00000446527.5:4 NR_109849.1:-5 ENST00000451213.2:-7 ENST00000669687.1:36 ENST00000656224.1:124 | ||
|nearest_unigene=Hs.593669 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA597322{{!}}PRJNA401781{{!}}PRJNA4843412{{!}}PRJNA615891{{!}}DRA013844{{!}}PRJNA548673{{!}}PRJDB5282 | |||
|species=human | |species=human | ||
|start= | |start=101025851 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
|transcript_name=BX538249 | |transcript_name=BX538249 | ||
|tss_cluster_detected= | |tss_cluster_detected=10 | ||
|tss_id=rfhg_10008.1 | |tss_id=rfhg_10008.1 | ||
|tss_score=1 | |tss_score=1 | ||
|uniprot_id= | |uniprot_id= | ||
}} | }} | ||
Latest revision as of 11:08, 13 March 2025
Basic information about the TSS
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| Source datasets | PRJNA597322|PRJNA401781|PRJNA4843412|PRJNA615891|DRA013844 |PRJNA548673|PRJDB5282 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | STRIPE-seq|CAGE|RAMPAGE|NETCAGE|SLIC_CAGE|oligo_capping |ReCappable-seq|C1CAGE | |||||||||||||
| TSS cluster detected* | 10 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D2204050,EH38E1372062) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 37 |
|---|---|
| Nearest PromoterID: | NR_109849 |
| Entrez ID: | 102606465 |
| Nearest Unigene: | Hs.593669 |
| Nearest Refseq: | NR_109849 |
| Nearest Ensembl: | |
| Gene Name: | DPH5 divergent transcript |
| Gene Alias: | - |
| Gene Type: | ncRNA |
| CpG%: | 0.078125 |
| GC%: | 0.723077 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.