TSS: Rfhg 100106.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000425248.5:0 NM_012133.6:0 NM_001290033.2:0 AF157833:0 AF207598:0 AK291409:0 HM005552:-3 LF384090:-3 MA619667:-3 ENST00000330992.8:5 BC110796:5 AB047847:42 AK022934:55 BC017443:59 | ||
|annotation=promoter-TSS (NM_012133) | |||
|ccre_category=PLS | |ccre_category=PLS | ||
|ccre_description=PLS,CTCF-bound (EH38D4030940,EH38E2590525) | |ccre_description=PLS,CTCF-bound (EH38D4030940,EH38E2590525) | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.133333 | |cpg_percent=0.133333 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_012133) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=16 | |distance_to_tss=16 | ||
|end=130668755 | |end=130668755 | ||
|entrez_id= | |entrez_id=26958 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.782609 | |gc_percent=0.782609 | ||
|gene_alias= | |gene_alias=2-COP{{!}}gamma-2-COP | ||
|gene_description= | |gene_description=coatomer protein complex subunit gamma 2 | ||
|gene_id=26958 | |gene_id=26958 | ||
|gene_name=COPI coat complex subunit gamma 2 | |gene_name=COPI coat complex subunit gamma 2 | ||
| Line 19: | Line 20: | ||
|gene_symbol=COPG2 | |gene_symbol=COPG2 | ||
|gene_synonyms=2-COP | |gene_synonyms=2-COP | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:2237 | |hgnc_mgi_id=HGNC:2237 | ||
|nearest_ensembl= | |methods=CAGE{{!}}TSS_database{{!}}NETCAGE{{!}}oligo_capping{{!}}STRIPE-seq{{!}}RAMPAGE{{!}}SLIC_CAGE{{!}}C1CAGE{{!}}ReCappable-seq | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000158623 | ||
|nearest_refseq= | |nearest_promoter_id=NM_012133 | ||
|nearest_unigene= | |nearest_refseq=NM_012133 | ||
|nearest_transcripts=HM005552:-3 LF384090:-3 MA619667:-3 ENST00000330992.8:5 BC110796:5 AB047847:42 AK022934:55 BC017443:59 | |||
|nearest_unigene=Hs.6421 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5{{!}}EPD{{!}}DRA000914{{!}}PRJNA4843412{{!}}DRA013844{{!}}PRJNA401781{{!}}PRJNA597322{{!}}PRJNA615891{{!}}PRJDB5282{{!}}PRJNA548673 | |||
|species=human | |species=human | ||
|start= | |start=130668710 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
|transcript_name=ENST00000425248.5 AF157833 AF207598 AK291409 | |transcript_name=ENST00000425248.5 AF157833 AF207598 AK291409 | ||
|tss_cluster_detected=13 | |||
|tss_id=rfhg_100106.1 | |tss_id=rfhg_100106.1 | ||
|tss_id_v3=hg_86162.1 | |tss_id_v3=hg_86162.1 | ||
Latest revision as of 11:08, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5|EPD|DRA000914|PRJNA4843412|DRA013844|PRJNA401781 |PRJNA597322|PRJNA615891|PRJDB5282|PRJNA548673 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE|TSS_database|NETCAGE|oligo_capping|STRIPE-seq|RAMPAGE |SLIC_CAGE|C1CAGE|ReCappable-seq | |||||||||||||||
| TSS cluster detected* | 13 | |||||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | PLS,CTCF-bound (EH38D4030940,EH38E2590525) |
|---|---|
| Category: | PLS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | 16 |
|---|---|
| Nearest PromoterID: | NM_012133 |
| Entrez ID: | 26958 |
| Nearest Unigene: | Hs.6421 |
| Nearest Refseq: | NM_012133 |
| Nearest Ensembl: | ENSG00000158623 |
| Gene Name: | COPI coat complex subunit gamma 2 |
| Gene Alias: | 2-COP|gamma-2-COP |
| Gene Type: | protein-coding |
| CpG%: | 0.133333 |
| GC%: | 0.782609 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.