TSS: Rfhg 100117.1: Difference between revisions

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(Created page with "{{TSSDetailV4 |annotation=promoter-TSS (ENST00000362111.4) |ccre_category=pELS |ccre_description=pELS (EH38D4031094,EH38E2590626) |chr=chr7 |cpg_percent=0.000000 |detailed_ann...")
 
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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000362111.4)
|all_trans=MA823167:-23 MB473130:-23 LF137845:-64 LF160918:-64 LF162810:-64 LF636350:-64 LF953562:-64 LG005907:-64 LG053603:-64 LG134507:-64 LG240842:-64 LP727168:-64 LP819438:-64 LP896669:-64 LP939380:-64 LQ070285:-64 LV470927:-64 LY405152:-64 LZ233853:-64 MA260391:-64 MA265463:-64 MA643786:-64 MA731670:-64 MS833367:-64 MS834358:-64 MA800839:-64 MP129617:-64 MP162540:-64 MP272069:-64 MB121664:-64 MP495315:-64 MS816693:-64 LF714774:-69 LF856708:-69 NR_029517.1:-73 LF404115:-73 LF404294:-73 LF714583:-73 LF856517:-73 LG051554:-73 LQ945660:-73 LX074090:-73 MA265468:-73 MA353646:-73 MA353825:-73 MP045286:-73 MP045465:-73 MP083956:-73 MP084135:-73 MA822830:-73 MA867083:-73 MB473074:-73 LZ218384:-81
|annotation=promoter-TSS (NR_029517)
|ccre_category=pELS
|ccre_category=pELS
|ccre_description=pELS (EH38D4031094,EH38E2590626)
|ccre_description=pELS (EH38D4031094,EH38E2590626)
|chr=chr7
|chr=chr7
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=miRNA-promoter-TSS (ENST00000362111.4)
|detailed_annotation=promoter-TSS (NR_029517)
|distance=-23
|distance=-23
|distance_to_tss=76
|distance_to_tss=76
|end=130877466
|end=130877466
|entrez_id=ENSG00000283797
|entrez_id=407024
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.666667
|gc_percent=0.666667
|gene_alias=
|gene_alias=MIRN29B1{{!}}miR-29b{{!}}miRNA29B1{{!}}mir-29b-1
|gene_description=
|gene_description=microRNA 29b-1
|gene_id=
|gene_id=
|gene_name=
|gene_name=
Line 19: Line 20:
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=miRNA
|gene_type=ncRNA
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000385015.1
|nearest_ensembl=ENSG00000283797
|nearest_refseq=
|nearest_promoter_id=NR_029517
|nearest_unigene=ENST00000385015
|nearest_refseq=NR_029517
|nearest_transcripts=LF137845:-64 LF160918:-64 LF162810:-64 LF636350:-64 LF953562:-64 LG005907:-64 LG053603:-64 LG134507:-64 LG240842:-64 LP727168:-64 LP819438:-64 LP896669:-64 LP939380:-64 LQ070285:-64 LV470927:-64 LY405152:-64 LZ233853:-64 MA260391:-64 MA265463:-64 MA643786:-64 MA731670:-64 MS833367:-64 MS834358:-64 MA800839:-64 MP129617:-64 MP162540:-64 MP272069:-64 MB121664:-64 MP495315:-64 MS816693:-64 LF714774:-69 LF856708:-69 NR_029517.1:-73 LF404115:-73 LF404294:-73 LF714583:-73 LF856517:-73 LG051554:-73 LQ945660:-73 LX074090:-73 MA265468:-73 MA353646:-73 MA353825:-73 MP045286:-73 MP045465:-73 MP083956:-73 MP084135:-73 MA822830:-73 MA867083:-73 MB473074:-73 LZ218384:-81
|nearest_unigene=
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=130877460
|start=130877461
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 11:08, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_100117.1
Species:human
Chr:chr7
Start:130877461
End:130877466
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:pELS (EH38D4031094,EH38E2590626)
Category:pELS

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:MA823167:-23
MB473130:-23
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • LF137845:-64
  • LF160918:-64
  • LF162810:-64
  • LF636350:-64
  • LF953562:-64
  • LG005907:-64
  • LG053603:-64
  • LG134507:-64
  • LG240842:-64
  • LP727168:-64
  • LP819438:-64
  • LP896669:-64
  • LP939380:-64
  • LQ070285:-64
  • LV470927:-64
  • LY405152:-64
  • LZ233853:-64
  • MA260391:-64
  • MA265463:-64
  • MA643786:-64
  • MA731670:-64
  • MS833367:-64
  • MS834358:-64
  • MA800839:-64
  • MP129617:-64
  • MP162540:-64
  • MP272069:-64
  • MB121664:-64
  • MP495315:-64
  • MS816693:-64
  • LF714774:-69
  • LF856708:-69
  • NR_029517.1:-73
  • LF404115:-73
  • LF404294:-73
  • LF714583:-73
  • LF856517:-73
  • LG051554:-73
  • LQ945660:-73
  • LX074090:-73
  • MA265468:-73
  • MA353646:-73
  • MA353825:-73
  • MP045286:-73
  • MP045465:-73
  • MP083956:-73
  • MP084135:-73
  • MA822830:-73
  • MA867083:-73
  • MB473074:-73
  • LZ218384:-81
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:76
Nearest PromoterID:NR_029517
Entrez ID:407024
Nearest Unigene:
Nearest Refseq:NR_029517
Nearest Ensembl:ENSG00000283797
Gene Name:
Gene Alias:MIRN29B1|miR-29b|miRNA29B1|mir-29b-1
Gene Type:ncRNA
CpG%:0.000000
GC%:0.666667
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "LF137845:-64 LF160918:-64 LF162810:-64 LF636350:-64 LF953562:-64 LG005907:-64 LG053603:-64 LG134507:-64 LG240842:-64 LP727168:-64 LP819438:-64 LP896669:-64 LP939380:-64 LQ070285:-64 LV470927:-64 LY405152:-64 LZ233853:-64 MA260391:-64 MA265463:-64 MA643786:-64 MA731670:-64 MS833367:-64 MS834358:-64 MA800839:-64 MP129617:-64 MP162540:-64 MP272069:-64 MB121664:-64 MP495315:-64 MS816693:-64 LF714774:-69 LF856708:-69 NR_029517.1:-73 LF404115:-73 LF404294:-73 LF714583:-73 LF856517:-73 LG051554:-73 LQ945660:-73 LX074090:-73 MA265468:-73 MA353646:-73 MA353825:-73 MP045286:-73 MP045465:-73 MP083956:-73 MP084135:-73 MA822830:-73 MA867083:-73 MB473074:-73 LZ218384:-81" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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