TSS: Rfhg 100671.1: Difference between revisions
From referenceTSS
(Created page with "{{TSSDetailV4 |annotation=intron (ENST00000614521.1, intron 19 of 32) |ccre_category=N |ccre_description=N |chr=chr7 |cpg_percent=0.000000 |detailed_annotation=protein_coding-...") |
No edit summary |
||
| (3 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=intron ( | |all_trans= | ||
|annotation=intron (NM_001321710, intron 20 of 32) | |||
|ccre_category=N | |ccre_category=N | ||
|ccre_description=N | |ccre_description=N | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.000000 | |cpg_percent=0.000000 | ||
|detailed_annotation= | |detailed_annotation=intron (NM_001321710, intron 20 of 32) | ||
|distance= | |distance= | ||
|distance_to_tss= | |distance_to_tss=-187877 | ||
|end=137531636 | |end=137531636 | ||
|entrez_id= | |entrez_id=5764 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.377358 | |gc_percent=0.377358 | ||
|gene_alias= | |gene_alias=HARP{{!}}HB-GAM{{!}}HBBM{{!}}HBGF-8{{!}}HBGF8{{!}}HBNF{{!}}HBNF-1{{!}}NEGF1{{!}}OSF-1 | ||
|gene_description= | |gene_description=pleiotrophin | ||
|gene_id= | |gene_id= | ||
|gene_name= | |gene_name= | ||
| Line 19: | Line 20: | ||
|gene_symbol= | |gene_symbol= | ||
|gene_synonyms= | |gene_synonyms= | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id= | |hgnc_mgi_id= | ||
|nearest_ensembl= | |methods=NETCAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000105894 | ||
|nearest_refseq= | |nearest_promoter_id=NM_002825 | ||
|nearest_unigene= | |nearest_refseq=NM_002825 | ||
|nearest_transcripts= | |||
|nearest_unigene=Hs.371249 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=PRJNA4843412 | |||
|species=human | |species=human | ||
|start= | |start=137531584 | ||
|strand=- | |strand=- | ||
|tata_box= | |tata_box= | ||
Latest revision as of 11:19, 13 March 2025
Basic information about the TSS
|
| |||||||||||||
| Source datasets | PRJNA4843412 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | NETCAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | - |
|---|---|
| Category: | - |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
|
|
TATA-Box annotation
| Distance to TSS: | -187877 |
|---|---|
| Nearest PromoterID: | NM_002825 |
| Entrez ID: | 5764 |
| Nearest Unigene: | Hs.371249 |
| Nearest Refseq: | NM_002825 |
| Nearest Ensembl: | ENSG00000105894 |
| Gene Name: | |
| Gene Alias: | HARP|HB-GAM|HBBM|HBGF-8|HBGF8|HBNF|HBNF-1|NEGF1|OSF-1 |
| Gene Type: | protein-coding |
| CpG%: | 0.000000 |
| GC%: | 0.377358 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |