TSS: Rfhg 100922.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=intron (ENST00000425687.5, intron 3 of 14)
|all_trans=
|annotation=intron (NM_001166254, intron 3 of 14)
|ccre_category=CTCF-only
|ccre_category=CTCF-only
|ccre_description=CTCF-only,CTCF-bound (EH38D4038866,EH38E2595931)
|ccre_description=CTCF-only,CTCF-bound (EH38D4038866,EH38E2595931)
|chr=chr7
|chr=chr7
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=protein_coding-intron (ENST00000336425.9, intron 4 of 16)
|detailed_annotation=L2{{!}}LINE{{!}}L2
|distance=
|distance=
|distance_to_tss=-7808
|distance_to_tss=-7848
|end=139821425
|end=139821425
|entrez_id=ENSG00000059377
|entrez_id=6916
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.500000
|gc_percent=0.500000
|gene_alias=
|gene_alias=BDPLT14{{!}}CYP5{{!}}CYP5A1{{!}}GHOSAL{{!}}THAS{{!}}TS{{!}}TXAS{{!}}TXS
|gene_description=
|gene_description=thromboxane A synthase 1
|gene_id=
|gene_id=
|gene_name=
|gene_name=
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|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=protein_coding
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000448866.5
|nearest_ensembl=ENSG00000059377
|nearest_refseq=
|nearest_promoter_id=NM_001366537
|nearest_unigene=ENST00000455353
|nearest_refseq=NM_001061
|nearest_transcripts=
|nearest_unigene=Hs.520757
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=139821407
|start=139821408
|strand=-
|strand=-
|tata_box=
|tata_box=

Latest revision as of 11:24, 13 March 2025

Basic information about the TSS


TSS ID:rfhg_100922.1
Species:human
Chr:chr7
Start:139821408
End:139821425
Strand:-
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation


Description:CTCF-only,CTCF-bound (EH38D4038866,EH38E2595931)
Category:CTCF-only

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation


Nearest transcript id and distance:
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
    Gene_name:
    Gene_symbol:
    Gene_synonyms:
    Gene_source:



    TATA-Box annotation


    Distance to TSS:-7848
    Nearest PromoterID:NM_001366537
    Entrez ID:6916
    Nearest Unigene:Hs.520757
    Nearest Refseq:NM_001061
    Nearest Ensembl:ENSG00000059377
    Gene Name:
    Gene Alias:BDPLT14|CYP5|CYP5A1|GHOSAL|THAS|TS|TXAS|TXS
    Gene Type:protein-coding
    CpG%:0.000000
    GC%:0.500000
    TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):