TSS: Rfhg 101036.1: Difference between revisions
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{{TSSDetailV4 | {{TSSDetailV4 | ||
|annotation=promoter-TSS ( | |all_trans=ENST00000565468.6:0 NM_001195278.2:0 ENST00000610315.1:147 ENST00000563442.1:308 | ||
|annotation=promoter-TSS (NM_001195278) | |||
|ccre_category=pELS | |ccre_category=pELS | ||
|ccre_description=pELS (EH38D4039954,EH38E2596740) | |ccre_description=pELS (EH38D4039954,EH38E2596740) | ||
|chr=chr7 | |chr=chr7 | ||
|cpg_percent=0.085106 | |cpg_percent=0.085106 | ||
|detailed_annotation= | |detailed_annotation=promoter-TSS (NM_001195278) | ||
|distance=0 | |distance=0 | ||
|distance_to_tss=- | |distance_to_tss=-3 | ||
|end=141074085 | |end=141074085 | ||
|entrez_id= | |entrez_id=100507421 | ||
|focus_ratio=NA | |focus_ratio=NA | ||
|gc_percent=0.729167 | |gc_percent=0.729167 | ||
|gene_alias= | |gene_alias=- | ||
|gene_description= | |gene_description=transmembrane protein 178B | ||
|gene_id=100507421 | |gene_id=100507421 | ||
|gene_name=transmembrane protein 178B | |gene_name=transmembrane protein 178B | ||
| Line 19: | Line 20: | ||
|gene_symbol=TMEM178B | |gene_symbol=TMEM178B | ||
|gene_synonyms=DKFZp547G036 | |gene_synonyms=DKFZp547G036 | ||
|gene_type= | |gene_type=protein-coding | ||
|hgnc_mgi_id=HGNC:44112 | |hgnc_mgi_id=HGNC:44112 | ||
|nearest_ensembl= | |methods=CAGE | ||
|nearest_promoter_id= | |nearest_ensembl=ENSG00000261115 | ||
|nearest_refseq= | |nearest_promoter_id=NM_001195278 | ||
|nearest_unigene= | |nearest_refseq=NM_001195278 | ||
|nearest_transcripts=ENST00000610315.1:147 ENST00000563442.1:308 | |||
|nearest_unigene=Hs.283851 | |||
|peak_score=1 | |peak_score=1 | ||
|reftss_version=4 | |reftss_version=4 | ||
|source_datasets=FANTOM5 | |||
|species=human | |species=human | ||
|start= | |start=141074038 | ||
|strand=+ | |strand=+ | ||
|tata_box= | |tata_box= | ||
Latest revision as of 11:26, 13 March 2025
Basic information about the TSS
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| Source datasets | FANTOM5 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Protocol | CAGE | |||||||||||||
| TSS cluster detected* | 1 | |||||||||||||
* The number of TSS cluster called data-sets (maximum 17)
cCREs annotation
| Description: | pELS (EH38D4039954,EH38E2596740) |
|---|---|
| Category: | pELS |
* cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.
Gene and protein annotation
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TATA-Box annotation
| Distance to TSS: | -3 |
|---|---|
| Nearest PromoterID: | NM_001195278 |
| Entrez ID: | 100507421 |
| Nearest Unigene: | Hs.283851 |
| Nearest Refseq: | NM_001195278 |
| Nearest Ensembl: | ENSG00000261115 |
| Gene Name: | transmembrane protein 178B |
| Gene Alias: | - |
| Gene Type: | protein-coding |
| CpG%: | 0.085106 |
| GC%: | 0.729167 |
| TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation): |
TSS expression
Expression data not found.