TSS: Rfhg 101162.1: Difference between revisions

From referenceTSS
Jump to: navigation, search
(Created page with "{{TSSDetailV4 |annotation=exon (ENST00000390392.3, exon 2 of 2) |ccre_category=N |ccre_description=N |chr=chr7 |cpg_percent=0.050000 |detailed_annotation=TR_V_gene-exon (ENST0...")
 
No edit summary
 
(3 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{TSSDetailV4
{{TSSDetailV4
|annotation=exon (ENST00000390392.3, exon 2 of 2)
|all_trans=AB977784:0 AB977904:0 S82065:7 X57616:-21 X57617:-21 X57618:-21 AB977851:28 AB977651:28 AB977825:30 DQ473378:31 DQ473379:31 DQ473384:31 DQ473388:31 AB977983:36 AB305990:-41 AB977578:-68 M13856:91 KX076483:92 KX076348:95 KX075549:100 KX076278:100 MG192843:103 MG193115:103 MG192620:103 MG192778:103 MG192820:103 MG192935:103 MG193117:103 MG193113:103 MG192918:103 MG192990:103 AF428128:103 MG192897:103 AF428129:103 AF428126:103 MG789114:103 MG789197:103 MG789264:103 MG789535:103 MG789565:103 MG789625:103 MG789654:103 MG790034:103 MG790047:103 MG790778:103 KM004232:103 EU340842:103 AY123173:103 AY123179:103 AY123182:103 AY123185:103 MG192709:103 MG192767:103 MG192821:103 MG192939:103 MG192686:103 AY123172:103 AY123178:103 AY123181:103 AY123184:103 MG192552:103 MG192708:103 MG192837:103 MG192851:103 MG192978:103 MG193105:103 AY123186:103 MG192667:103 MG192817:103 MG192735:103 MG192934:103 MG192975:103 MG193009:103 MG193072:103 MG193091:103 MG789081:103 MG789096:103 MG789103:103 MG789296:103 MG789344:103 MG789384:103 MG789433:103 MG789611:103 MG789798:103 MG789869:103 MG790116:103 MG790253:103 MG790409:103 MG790504:103 MG790979:103 KM004036:103 KM004228:103 KM004692:103 AY292265:103 AY292266:103 MK088556:103 AY190092:106 AY190098:107 KX074565:109 KX074893:109 KX075900:109 KX076646:109 KX076149:109 KX076045:109 KX076074:109 KX074314:109 KX076217:109 KX076372:109 KX075161:109 KX075750:109 KX076349:109 KX076351:109 KX076354:109 KX076376:109 KX077046:109 KX074437:109 KX074579:109 KX074720:109 KX075318:109 KX076170:109 HM236761:109 GQ502886:109 KX075139:110 KX075575:110 HM236505:112 AY751922:112 HM236582:112 HM236567:115 HM236706:115 HM236506:118 L34729:118 L34726:121 U39140:121 HM236556:124 HM236719:124 KX076153:127 U39133:133 AB978015:136 KX076936:136 AF037567:143 KX074993:147 KX075673:147 KX074878:147 KX074527:147 KX074873:147 KX076347:147 AF045810:148 AJ305359:148 X62856:-217 AB978075:-217 D13083:-230 L06888:-239 AB305935:-243 X58812:-254 AB305807:-254 AB977853:-269 AB977557:-269 AB977820:-269 AB305853:-269 AB977753:-269 AB977910:-269 U47744:-275 AB305937:-313 U47743:-335 AB305887:-348 X58811:-349 AB306255:-349 LP896468:-350 AB305961:-350 AB977888:-351
|annotation=Intergenic
|ccre_category=N
|ccre_category=N
|ccre_description=N
|ccre_description=N
|chr=chr7
|chr=chr7
|cpg_percent=0.050000
|cpg_percent=0.050000
|detailed_annotation=TR_V_gene-exon (ENST00000390392.3, exon 2 of 2)
|detailed_annotation=Intergenic
|distance=0
|distance=0
|distance_to_tss=360
|distance_to_tss=-73532
|end=142345791
|end=142345791
|entrez_id=ENSG00000211745
|entrez_id=207147
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.523810
|gc_percent=0.523810
|gene_alias=
|gene_alias=-
|gene_description=
|gene_description=trypsinogen-like pseudogene
|gene_id=
|gene_id=
|gene_name=
|gene_name=
Line 19: Line 20:
|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=TR_V_gene
|gene_type=pseudo
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000390392.3
|nearest_ensembl=ENSG00000186163
|nearest_refseq=
|nearest_promoter_id=NR_036483
|nearest_unigene=ENST00000390392
|nearest_refseq=NR_036483
|nearest_transcripts=S82065:7 X57616:-21 X57617:-21 X57618:-21 AB977851:28 AB977651:28 AB977825:30 DQ473378:31 DQ473379:31 DQ473384:31 DQ473388:31 AB977983:36 AB305990:-41 AB977578:-68 M13856:91 KX076483:92 KX076348:95 KX075549:100 KX076278:100 MG192843:103 MG193115:103 MG192620:103 MG192778:103 MG192820:103 MG192935:103 MG193117:103 MG193113:103 MG192918:103 MG192990:103 AF428128:103 MG192897:103 AF428129:103 AF428126:103 MG789114:103 MG789197:103 MG789264:103 MG789535:103 MG789565:103 MG789625:103 MG789654:103 MG790034:103 MG790047:103 MG790778:103 KM004232:103 EU340842:103 AY123173:103 AY123179:103 AY123182:103 AY123185:103 MG192709:103 MG192767:103 MG192821:103 MG192939:103 MG192686:103 AY123172:103 AY123178:103 AY123181:103 AY123184:103 MG192552:103 MG192708:103 MG192837:103 MG192851:103 MG192978:103 MG193105:103 AY123186:103 MG192667:103 MG192817:103 MG192735:103 MG192934:103 MG192975:103 MG193009:103 MG193072:103 MG193091:103 MG789081:103 MG789096:103 MG789103:103 MG789296:103 MG789344:103 MG789384:103 MG789433:103 MG789611:103 MG789798:103 MG789869:103 MG790116:103 MG790253:103 MG790409:103 MG790504:103 MG790979:103 KM004036:103 KM004228:103 KM004692:103 AY292265:103 AY292266:103 MK088556:103 AY190092:106 AY190098:107 KX074565:109 KX074893:109 KX075900:109 KX076646:109 KX076149:109 KX076045:109 KX076074:109 KX074314:109 KX076217:109 KX076372:109 KX075161:109 KX075750:109 KX076349:109 KX076351:109 KX076354:109 KX076376:109 KX077046:109 KX074437:109 KX074579:109 KX074720:109 KX075318:109 KX076170:109 HM236761:109 GQ502886:109 KX075139:110 KX075575:110 HM236505:112 AY751922:112 HM236582:112 HM236567:115 HM236706:115 HM236506:118 L34729:118 L34726:121 U39140:121 HM236556:124 HM236719:124 KX076153:127 U39133:133 AB978015:136 KX076936:136 AF037567:143 KX074993:147 KX075673:147 KX074878:147 KX074527:147 KX074873:147 KX076347:147 AF045810:148 AJ305359:148 X62856:-217 AB978075:-217 D13083:-230 L06888:-239 AB305935:-243 X58812:-254 AB305807:-254 AB977853:-269 AB977557:-269 AB977820:-269 AB305853:-269 AB977753:-269 AB977910:-269 U47744:-275 AB305937:-313 U47743:-335 AB305887:-348 X58811:-349 AB306255:-349 LP896468:-350 AB305961:-350 AB977888:-351
|nearest_unigene=Hs.604069
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5
|species=human
|species=human
|start=142345770
|start=142345771
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 11:28, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_101162.1
Species:human
Chr:chr7
Start:142345771
End:142345791
Strand:+
Source datasetsFANTOM5
ProtocolCAGE
TSS cluster detected*1

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AB977784:0
AB977904:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • S82065:7
  • X57616:-21
  • X57617:-21
  • X57618:-21
  • AB977851:28
  • AB977651:28
  • AB977825:30
  • DQ473378:31
  • DQ473379:31
  • DQ473384:31
  • DQ473388:31
  • AB977983:36
  • AB305990:-41
  • AB977578:-68
  • M13856:91
  • KX076483:92
  • KX076348:95
  • KX075549:100
  • KX076278:100
  • MG192843:103
  • MG193115:103
  • MG192620:103
  • MG192778:103
  • MG192820:103
  • MG192935:103
  • MG193117:103
  • MG193113:103
  • MG192918:103
  • MG192990:103
  • AF428128:103
  • MG192897:103
  • AF428129:103
  • AF428126:103
  • MG789114:103
  • MG789197:103
  • MG789264:103
  • MG789535:103
  • MG789565:103
  • MG789625:103
  • MG789654:103
  • MG790034:103
  • MG790047:103
  • MG790778:103
  • KM004232:103
  • EU340842:103
  • AY123173:103
  • AY123179:103
  • AY123182:103
  • AY123185:103
  • MG192709:103
  • MG192767:103
  • MG192821:103
  • MG192939:103
  • MG192686:103
  • AY123172:103
  • AY123178:103
  • AY123181:103
  • AY123184:103
  • MG192552:103
  • MG192708:103
  • MG192837:103
  • MG192851:103
  • MG192978:103
  • MG193105:103
  • AY123186:103
  • MG192667:103
  • MG192817:103
  • MG192735:103
  • MG192934:103
  • MG192975:103
  • MG193009:103
  • MG193072:103
  • MG193091:103
  • MG789081:103
  • MG789096:103
  • MG789103:103
  • MG789296:103
  • MG789344:103
  • MG789384:103
  • MG789433:103
  • MG789611:103
  • MG789798:103
  • MG789869:103
  • MG790116:103
  • MG790253:103
  • MG790409:103
  • MG790504:103
  • MG790979:103
  • KM004036:103
  • KM004228:103
  • KM004692:103
  • AY292265:103
  • AY292266:103
  • MK088556:103
  • AY190092:106
  • AY190098:107
  • KX074565:109
  • KX074893:109
  • KX075900:109
  • KX076646:109
  • KX076149:109
  • KX076045:109
  • KX076074:109
  • KX074314:109
  • KX076217:109
  • KX076372:109
  • KX075161:109
  • KX075750:109
  • KX076349:109
  • KX076351:109
  • KX076354:109
  • KX076376:109
  • KX077046:109
  • KX074437:109
  • KX074579:109
  • KX074720:109
  • KX075318:109
  • KX076170:109
  • HM236761:109
  • GQ502886:109
  • KX075139:110
  • KX075575:110
  • HM236505:112
  • AY751922:112
  • HM236582:112
  • HM236567:115
  • HM236706:115
  • HM236506:118
  • L34729:118
  • L34726:121
  • U39140:121
  • HM236556:124
  • HM236719:124
  • KX076153:127
  • U39133:133
  • AB978015:136
  • KX076936:136
  • AF037567:143
  • KX074993:147
  • KX075673:147
  • KX074878:147
  • KX074527:147
  • KX074873:147
  • KX076347:147
  • AF045810:148
  • AJ305359:148
  • X62856:-217
  • AB978075:-217
  • D13083:-230
  • L06888:-239
  • AB305935:-243
  • X58812:-254
  • AB305807:-254
  • AB977853:-269
  • AB977557:-269
  • AB977820:-269
  • AB305853:-269
  • AB977753:-269
  • AB977910:-269
  • U47744:-275
  • AB305937:-313
  • U47743:-335
  • AB305887:-348
  • X58811:-349
  • AB306255:-349
  • LP896468:-350
  • AB305961:-350
  • AB977888:-351
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-73532
Nearest PromoterID:NR_036483
Entrez ID:207147
Nearest Unigene:Hs.604069
Nearest Refseq:NR_036483
Nearest Ensembl:ENSG00000186163
Gene Name:
Gene Alias:-
Gene Type:pseudo
CpG%:0.050000
GC%:0.523810
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "S82065:7 X57616:-21 X57617:-21 X57618:-21 AB977851:28 AB977651:28 AB977825:30 DQ473378:31 DQ473379:31 DQ473384:31 DQ473388:31 AB977983:36 AB305990:-41 AB977578:-68 M13856:91 KX076483:92 KX076348:95 KX075549:100 KX076278:100 MG192843:103 MG193115:103 MG192620:103 MG192778:103 MG192820:103 MG192935:103 MG193117:103 MG193113:103 MG192918:103 MG192990:103 AF428128:103 MG192897:103 AF428129:103 AF428126:103 MG789114:103 MG789197:103 MG789264:103 MG789535:103 MG789565:103 MG789625:103 MG789654:103 MG790034:103 MG790047:103 MG790778:103 KM004232:103 EU340842:103 AY123173:103 AY123179:103 AY123182:103 AY123185:103 MG192709:103 MG192767:103 MG192821:103 MG192939:103 MG192686:103 AY123172:103 AY123178:103 AY123181:103 AY123184:103 MG192552:103 MG192708:103 MG192837:103 MG192851:103 MG192978:103 MG193105:103 AY123186:103 MG192667:103 MG192817:103 MG192735:103 MG192934:103 MG192975:103 MG193009:103 MG193072:103 MG193091:103 MG789081:103 MG789096:103 MG789103:103 MG789296:103 MG789344:103 MG789384:103 MG789433:103 MG789611:103 MG789798:103 MG789869:103 MG790116:103 MG790253:103 MG790409:103 MG790504:103 MG790979:103 KM004036:103 KM004228:103 KM004692:103 AY292265:103 AY292266:103 MK088556:103 AY190092:106 AY190098:107 KX074565:109 KX074893:109 KX075900:109 KX076646:109 KX076149:109 KX076045:109 KX076074:109 KX074314:109 KX076217:109 KX076372:109 KX075161:109 KX075750:109 KX076349:109 KX076351:109 KX076354:109 KX076376:109 KX077046:109 KX074437:109 KX074579:109 KX074720:109 KX075318:109 KX076170:109 HM236761:109 GQ502886:109 KX075139:110 KX075575:110 HM236505:112 AY751922:112 HM236582:112 HM236567:115 HM236706:115 HM236506:118 L34729:118 L34726:121 U39140:121 HM236556:124 HM236719:124 KX076153:127 U39133:133 AB978015:136 KX076936:136 AF037567:143 KX074993:147 KX075673:147 KX074878:147 KX074527:147 KX074873:147 KX076347:147 AF045810:148 AJ305359:148 X62856:-217 AB978075:-217 D13083:-230 L06888:-239 AB305935:-243 X58812:-254 AB305807:-254 AB977853:-269 AB977557:-269 AB977820:-269 AB305853:-269 AB977753:-269 AB977910:-269 U47744:-275 AB305937:-313 U47743:-335 AB305887:-348 X58811:-349 AB306255:-349 LP896468:-350 AB305961:-350 AB977888:-351" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "https://reftss.riken.jp/reftss/index.php?title=TSS:Rfhg_101162.1&oldid=3570756"