TSS: Rfhg 101273.1: Difference between revisions

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{{TSSDetailV4
{{TSSDetailV4
|annotation=promoter-TSS (ENST00000616518.1)
|all_trans=AB977912:0 AB977609:0 AB305959:0 AB977712:0 M73464:0 AB749903:0 X57725:0 X57726:0 AB977960:0 X58800:0 AB305969:0 X74854:0 AB977501:0 M62376:-15 ENST00000616518.1:-21 AJ007779:21 AB978258:49 AB978134:55 AB977522:115 EF592005:239 Z47369:240 KX076274:282 KX075641:306 KX076025:306 KX075772:309 KX075664:312 AY190085:319 Y15204:335 JF731189:359 MG192947:386 MG193010:386 MG192738:386 MG193061:386 MG192582:386 MG192758:386 MG192692:386 MG789024:386 MG789083:386 MG789815:386 MG790383:386 MG790385:386 KM004041:386 KM004270:386 MG193074:386 MG192607:386 MG192743:386 MG193018:386 MG192798:386 MG192849:386 MG790115:386 MG790133:386 MG790168:386 MG790381:386 MG790687:386 MG790695:386 MG790762:386 MG790843:386 MG790856:386 MG791046:386 KM004762:386 KM004763:386 KM004764:386 KM004765:386 KX076023:387 KX074842:387 KX076121:387 KX076138:387 KX076179:387 KX076212:387 KX074244:387 KX077052:387 KX076533:389 HM236783:398 AY534315:401 AB977555:401 HM236781:407 HM236782:413 S57604:425 JF731209:431
|annotation=intron (NM_001363538, intron 11 of 11)
|ccre_category=N
|ccre_category=N
|ccre_description=N
|ccre_description=N
|chr=chr7
|chr=chr7
|cpg_percent=0.000000
|cpg_percent=0.000000
|detailed_annotation=TR_V_gene-promoter-TSS (ENST00000616518.1)
|detailed_annotation=intron (NM_001363538, intron 11 of 11)
|distance=0
|distance=0
|distance_to_tss=38
|distance_to_tss=-73333
|end=142592984
|end=142592984
|entrez_id=ENSG00000276819
|entrez_id=100463482
|focus_ratio=NA
|focus_ratio=NA
|gc_percent=0.472222
|gc_percent=0.472222
|gene_alias=
|gene_alias=HN6
|gene_description=
|gene_description=MT-RNR2 like 6
|gene_id=
|gene_id=
|gene_name=
|gene_name=
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|gene_symbol=
|gene_symbol=
|gene_synonyms=
|gene_synonyms=
|gene_type=TR_V_gene
|gene_type=protein-coding
|hgnc_mgi_id=
|hgnc_mgi_id=
|nearest_ensembl=
|methods=CAGE
|nearest_promoter_id=ENST00000616518.1
|nearest_ensembl=ENSG00000270672
|nearest_refseq=
|nearest_promoter_id=NM_001190487
|nearest_unigene=ENST00000616518
|nearest_refseq=NM_001190487
|nearest_transcripts=M62376:-15 ENST00000616518.1:-21 AJ007779:21 AB978258:49 AB978134:55 AB977522:115 EF592005:239 Z47369:240 KX076274:282 KX075641:306 KX076025:306 KX075772:309 KX075664:312 AY190085:319 Y15204:335 JF731189:359 MG192947:386 MG193010:386 MG192738:386 MG193061:386 MG192582:386 MG192758:386 MG192692:386 MG789024:386 MG789083:386 MG789815:386 MG790383:386 MG790385:386 KM004041:386 KM004270:386 MG193074:386 MG192607:386 MG192743:386 MG193018:386 MG192798:386 MG192849:386 MG790115:386 MG790133:386 MG790168:386 MG790381:386 MG790687:386 MG790695:386 MG790762:386 MG790843:386 MG790856:386 MG791046:386 KM004762:386 KM004763:386 KM004764:386 KM004765:386 KX076023:387 KX074842:387 KX076121:387 KX076138:387 KX076179:387 KX076212:387 KX074244:387 KX077052:387 KX076533:389 HM236783:398 AY534315:401 AB977555:401 HM236781:407 HM236782:413 S57604:425 JF731209:431
|nearest_unigene=
|peak_score=1
|peak_score=1
|reftss_version=4
|reftss_version=4
|source_datasets=FANTOM5{{!}}DRA000914
|species=human
|species=human
|start=142592948
|start=142592949
|strand=+
|strand=+
|tata_box=
|tata_box=

Latest revision as of 11:29, 13 March 2025

Basic information about the TSS

TSS ID:rfhg_101273.1
Species:human
Chr:chr7
Start:142592949
End:142592984
Strand:+
Source datasetsFANTOM5|DRA000914
ProtocolCAGE
TSS cluster detected*2

  * The number of TSS cluster called data-sets (maximum 17)


cCREs annotation

Description:-
Category:-

  * cCREs are candidates for cis regulatory elements generated from the subset of representative DNase hypersensitivity sites supported by either histone modifications or CTCF-binding data. Find more details here.



Gene and protein annotation

Nearest transcript id and distance:AB977912:0
AB977609:0
AB305959:0
AB977712:0
M73464:0
AB749903:0
X57725:0
X57726:0
AB977960:0
X58800:0
AB305969:0
X74854:0
AB977501:0
GeneID:
HGNC/MGI_ID:
UniProt_ID:
Nearer transcript ids and distances:
  • M62376:-15
  • ENST00000616518.1:-21
  • AJ007779:21
  • AB978258:49
  • AB978134:55
  • AB977522:115
  • EF592005:239
  • Z47369:240
  • KX076274:282
  • KX075641:306
  • KX076025:306
  • KX075772:309
  • KX075664:312
  • AY190085:319
  • Y15204:335
  • JF731189:359
  • MG192947:386
  • MG193010:386
  • MG192738:386
  • MG193061:386
  • MG192582:386
  • MG192758:386
  • MG192692:386
  • MG789024:386
  • MG789083:386
  • MG789815:386
  • MG790383:386
  • MG790385:386
  • KM004041:386
  • KM004270:386
  • MG193074:386
  • MG192607:386
  • MG192743:386
  • MG193018:386
  • MG192798:386
  • MG192849:386
  • MG790115:386
  • MG790133:386
  • MG790168:386
  • MG790381:386
  • MG790687:386
  • MG790695:386
  • MG790762:386
  • MG790843:386
  • MG790856:386
  • MG791046:386
  • KM004762:386
  • KM004763:386
  • KM004764:386
  • KM004765:386
  • KX076023:387
  • KX074842:387
  • KX076121:387
  • KX076138:387
  • KX076179:387
  • KX076212:387
  • KX074244:387
  • KX077052:387
  • KX076533:389
  • HM236783:398
  • AY534315:401
  • AB977555:401
  • HM236781:407
  • HM236782:413
  • S57604:425
  • JF731209:431
view more...
Gene_name:
Gene_symbol:
Gene_synonyms:
Gene_source:



TATA-Box annotation

Distance to TSS:-73333
Nearest PromoterID:NM_001190487
Entrez ID:100463482
Nearest Unigene:
Nearest Refseq:NM_001190487
Nearest Ensembl:ENSG00000270672
Gene Name:
Gene Alias:HN6
Gene Type:protein-coding
CpG%:0.000000
GC%:0.472222
TATA-Box(TBP)/Promoter/Homer Distance From Peak(sequence,strand,conservation):




















Property "Nearest transcripts" (as page type) with input value "M62376:-15 ENST00000616518.1:-21 AJ007779:21 AB978258:49 AB978134:55 AB977522:115 EF592005:239 Z47369:240 KX076274:282 KX075641:306 KX076025:306 KX075772:309 KX075664:312 AY190085:319 Y15204:335 JF731189:359 MG192947:386 MG193010:386 MG192738:386 MG193061:386 MG192582:386 MG192758:386 MG192692:386 MG789024:386 MG789083:386 MG789815:386 MG790383:386 MG790385:386 KM004041:386 KM004270:386 MG193074:386 MG192607:386 MG192743:386 MG193018:386 MG192798:386 MG192849:386 MG790115:386 MG790133:386 MG790168:386 MG790381:386 MG790687:386 MG790695:386 MG790762:386 MG790843:386 MG790856:386 MG791046:386 KM004762:386 KM004763:386 KM004764:386 KM004765:386 KX076023:387 KX074842:387 KX076121:387 KX076138:387 KX076179:387 KX076212:387 KX074244:387 KX077052:387 KX076533:389 HM236783:398 AY534315:401 AB977555:401 HM236781:407 HM236782:413 S57604:425 JF731209:431" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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